| Protein: | ubc-25 |
| Organism: | Caenorhabditis elegans |
| Length: | 387 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubc-25.
| Description | E-value | Query Range |
Subject Range |
|
|
397.0 | [0..1] | [387..1] |
|
Region A: Residues: [1-210] |
1 11 21 31 41 51
| | | | | |
1 MACLRKLKED IQVLEKLFPK NHNRFQILSA SVDELSMKFI NAENKGIIVT ANIQENYPRQ 60
61 PPIWFSESDD VPVIGMSLQR LTETEESTNI LHQVHRLVSD LCSFYNLQMP CELPQIAPPV 120
121 RDDIDEGRGS DISDTTSEPI DDDMAGDGEV DDDDEEEEDD EDADGDIEIV EMAEEDPTSQ 180
181 HDVGVSKEGL DMLDKVSKIN RQQHLDGKVQ
|
| Detection Method: |  |
| Confidence: | 1.05 |
| Match: | 1tteA |
| Description: | The Structure of a Class II ubiquitin-conjugating enzyme, Ubc1. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 0.469169254031451 | bayes_pls_golite062009 |
| binding | 0.44075344288274 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.35936785933411 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.108796735243525 | bayes_pls_golite062009 |
|
Region A: Residues: [211-387] |
1 11 21 31 41 51
| | | | | |
1 GSITATDRLM KEIRDIHRSE HFKNGIYTFE LEKEENLYQW WIKLHKVDED SPLFEDMKKL 60
61 KKDHNQDHLL FSFTFNEKFP CDPPFVRVVA PHINQGFVLG GGAICMELLT KQGWSSAYSI 120
121 ESCILQIAAT LVKGRARISF DAKHTSTYSM ARAQQSFKSL QQIHAKSGWY TPPKTEG
|
| Detection Method: | |
| Confidence: | 32.39794 |
| Match: | 1zuoA |
| Description: | Structure of Human Ubiquitin-Conjugating Enzyme (UBCi) Involved in Embryo Attachment and Implantation |
Matching Structure (courtesy of the PDB): |
|
