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Protein Overview: ref-2

General Information:
Name(s) found: ref-2 / CE33037 [WormBase]
Description(s) found:
Found 16 descriptions.
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  • WBGene00004335 locus:ref-2 status:Confirmed UniProt:Q94178 protein_id:CCD67553.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 302 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    oviposition [IMPLink to PubMed articleLink to PubMed article]
    organ morphogenesis [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSDYYTQSQ GPTVEQQPEW QASVQPYSDP HAYSPSFYMN MSQVPHFLPA QVDPFIYPNT  60
   61 LGSYGGDKQV QCLWETNGQV CMHVCQNSGE LSTHISSNHI THDSKFVCLW KGCDREFKMF 120
  121 KAKYKLVNHM RVHTGERPFL CDVCNKVFAR SENLKIHKRI HSGEKPFQCT HNGCTKLFAN 180
  181 SSDRKKHMHV HSSHKPYSCM YPDCGKTYTH PSSLRKHTKV HENEKKSQLS PEHDESSDSG 240
  241 NASIGTPTTD ESLTFSPENI KRDQHLHTMH TFMDRPNPFM QMYQNQFSNP TYHMFMAKPD 300
  301 SY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..87] PSI-BLAST 4.69897 HIGH-RESOLUTION SOLUTION STRUCTURE OF THE DOUBLE CYS2*HIS2 ZINC FINGER FROM THE HUMAN ENHANCER BINDING PROTEIN MBP-1
    2 View Details [88..123] PSI-BLAST 23.522879 Five-finger GLI1
    3 View Details [124..302] PSI-BLAST 57.522879 No description for 2i13A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.61993443866178 bayes_pls_golite062009
  • DNA binding
    		•  0.94762880941053 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.83697324179524 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.393163105327437 bayes_pls_golite062009
  • protein binding
    		•  0.309302474986083 bayes_pls_golite062009
  • transcription factor activity
    		•  0.21812283292306 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle