Protein Overview: smi-1

General Information:
Name(s) found:	smi-1 / CE32964 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00004886 locus:smi-1 status:Confirmed UniProt:Q9N405 protein_id:CCD62163.1 [WormBase] gi\|71993428\|ref\|NP_001022847.1\| SMN (survival of motor neuron) protein Interactor family member (smi-1) [Caenorhabditis elegans] [NCBI NR] ref\|NP_497469.2\| survival motor neuron interacting protein 1 (29.4 kD) (3C969) [Caenorhabditis elegans] [NCBI NR] gi\|26251568\|gb\|AAF60526.2\| Smn (survival of motor neuron) protein interactor protein 1, isoform a, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR] [wormpep104.fasta] CE32964 WBGene00004886 locus:smi-1 status:Confirmed TR:Q9N405 protein_id:AAF60526.2 [wormpep150.fasta] 32964 WBGene00004886 locus:smi-1 status:Confirmed TR:Q9N405 protein_id:AAF60526.2 [wormpep130-phg-ecoli-orf-rand.fasta] survival motor neuron interacting protein 1 (29.4 kD) (3C969) [Caenorhabditis elegans]gi\|26251568\|gb\|AAF60526.2\| Smn (survival of motor neuron) protein interactor protein 1, isoform a [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas] locus:smi-1 status:Confirmed TR:Q9N405 protein_id:AAF60526.2 [wormpep115.fasta.reversed] CE32964 WBGene00004886 locus:smi-1 status:Confirmed UniProt:Q9N405_CAEEL protein_id:AAF60526.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE32964 WBGene00004886 locus:smi-1 status:Confirmed UniProt:Q9N405_CAEEL protein_id:AAF60526.2\| [wormORF-contam.fasta] Smn (survival of motor neuron) protein interactor protein 1, isoform a [Caenorhabditis elegans] [nr-271106-contam.fasta] SMN (survival of motor neuron) protein Interactor family member (smi-1) [Caenorhabditis elegans] [nr-271106-contam.fasta] CE32964 WBGene00004886 locus:smi-1 status:Confirmed UniProt:Q9N405 protein_id:AAF60526.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE32964 WBGene00004886 locus:smi-1 status:Confirmed UniProt:Q9N405 protein_id:CCD62163.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta] SMN (Survival of motor neuron) protein Interactor OS=Caenorhabditis elegans GN=smi-1 PE=1 SV=2 [CAEEL.fasta.20160308]
Organism:	Caenorhabditis elegans
Length:	254 amino acids
Gene Ontology:
Cellular Component:	cytoplasm [IDA]
Biological Process:	spliceosome assembly [IEA] nuclear mRNA splicing, via spliceosome [IEA]
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQEACLGPS DDFEADDVDM TSPAMSAAQY LRQMQAERRG TKNVVRIAQK SPDSTSPEAK  60
   61 KQKQWLESVG YQEVKKIETP SPLIPSEEWR QEKCRKFEET RAKMALKIEK FSPMRIDRLN 120
  121 SPEEEEWHEI LLEKCLPEFQ DIAGNFLNHT GTPPALRMVF SIPKRHLSQL IEYLVDWSIE 180
  181 EGLNRPIREW IYSLLAVIDL PLVQDVVSAL RRLVKECRSL RSELSIDRKS EANEFSLFIT 240
  241 IITIFFGQKD LADI

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..76]	MSA	1.027988	View MSA. No confident structure predictions are available.
2	View Details	[77..254]	MSA	5.033992	View MSA. No confident structure predictions are available.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.92

Protein Overview: smi-1

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: