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Protein Overview: smi-1

General Information:
Name(s) found: smi-1 / CE32964 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00004886 locus:smi-1 status:Confirmed UniProt:Q9N405 protein_id:CCD62163.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 254 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    Biological Process: spliceosome assembly [IEALink to PubMed article]
    nuclear mRNA splicing, via spliceosome [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQEACLGPS DDFEADDVDM TSPAMSAAQY LRQMQAERRG TKNVVRIAQK SPDSTSPEAK  60
   61 KQKQWLESVG YQEVKKIETP SPLIPSEEWR QEKCRKFEET RAKMALKIEK FSPMRIDRLN 120
  121 SPEEEEWHEI LLEKCLPEFQ DIAGNFLNHT GTPPALRMVF SIPKRHLSQL IEYLVDWSIE 180
  181 EGLNRPIREW IYSLLAVIDL PLVQDVVSAL RRLVKECRSL RSELSIDRKS EANEFSLFIT 240
  241 IITIFFGQKD LADI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..76] MSA 1.027988 View MSA. No confident structure predictions are available.
    2 View Details [77..254] MSA 5.033992 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle