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Protein Overview: psf-1

General Information:
Name(s) found: psf-1 / CE32391 [WormBase]
Description(s) found:
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  • WBGene00017778 locus:nono-1 status:Partially_confirmed UniProt:Q8I7K5 protein_id:CCD68786.1 [WormBase]
  • gi|32564998|ref|NP_871666.1| Polypyrimidine-tract-binding protein (PTB)-associated-Splicing Factor homolog family member (psf-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|24636089|gb|AAN63408.1| Polypyrimidine-tract-binding protein (ptb)-associated-splicing factor homolog protein 1, isoform d, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep104.fasta]
  • CE32391 WBGene00017778 status:Partially_confirmed TR:Q8I7K5 protein_id:AAN63408.1 [wormpep150.fasta]
  • 32391 WBGene00017778 status:Partially_confirmed TR:Q8I7K5 protein_id:AAN63408.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • RNA-binding region RNP-1 (3H44) [Caenorhabditis elegans]gi|24636089|gb|AAN63408.1| Hypothetical protein F25B5.7d [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q8I7K5 protein_id:AAN63408.1 [wormpep115.fasta.reversed]
  • CE32391 WBGene00017778 locus:psf-1 status:Partially_confirmed UniProt:Q8I7K5_CAEEL protein_id:AAN63408.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE32391 WBGene00017778 locus:psf-1 status:Partially_confirmed UniProt:Q8I7K5_CAEEL protein_id:AAN63408.1| [wormORF-contam.fasta]
  • F25B5.7d [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein F25B5.7d [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE32391 WBGene00017778 locus:psf-1 status:Partially_confirmed UniProt:Q8I7K5 protein_id:AAN63408.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE32391 WBGene00017778 locus:psf-1 status:Partially_confirmed UniProt:Q8I7K5 protein_id:CCD68786.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE32391 WBGene00017778 locus:nono-1 status:Partially_confirmed UniProt:Q8I7K5 protein_id:CCD68786.1 [wormpep246-ecoli-contam.fasta]
  • Isoform of B3GWA1, NONO (Conserved nuclear protein, aka PSF) homolog OS=Caenorhabditis elegans GN=nono-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 374 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: morphogenesis of an epithelium [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGARRDNRR SNGRDDSSRV AKAENDRKPG RENRGGDEKR GNSNNAARSG GGGGGNRGGA  60
   61 ERGIAPAQQP YDNNGGHRSG GGGGRSGGGG TSFNGAAFTE SQLMDEVPKK KFTGRCRLFV 120
  121 GNLPNEVKET ELKELFSPHG DIAECYLSGK GFAFLRLDTR AHAESAKEAI DGRIIHGRQV 180
  181 RVRFAVHGAA IRVKELSPTV SNEMLYHAFS HFGDVERAVH IVDEKGRPTG EGIVEFERKP 240
  241 NCNEAMAAIR DKVFLLTASP KPLICEVLEP RDEDDGLAER MIPRTPGLSK ERELGPRFPT 300
  301 PNSFEYVYGM KWKELYVVEQ KRRAQLDEEL RESRRRLESD MELAYQDYQA QMLREGYLMF 360
  361 FLLFFWFRAL FFFF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run None Entered No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..110] FFAS03 0.961 Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
    2 View Details [111..271] PSI-BLAST 31.522879 Poly(A)-binding protein
    3 View Details [272..374] PSI-BLAST 11.39794 No description for 2d9pA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle