| Protein: | psf-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 374 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for psf-1.
| Description | E-value | Query Range |
Subject Range |
|
|
218.0 | [0..1] | [355..22] |
|
Region A: Residues: [1-110] |
1 11 21 31 41 51
| | | | | |
1 MSGARRDNRR SNGRDDSSRV AKAENDRKPG RENRGGDEKR GNSNNAARSG GGGGGNRGGA 60
61 ERGIAPAQQP YDNNGGHRSG GGGGRSGGGG TSFNGAAFTE SQLMDEVPKK
|
| Detection Method: |  |
| Confidence: | 0.961 |
| Match: | 1jchA |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [111-271] |
1 11 21 31 41 51
| | | | | |
1 KFTGRCRLFV GNLPNEVKET ELKELFSPHG DIAECYLSGK GFAFLRLDTR AHAESAKEAI 60
61 DGRIIHGRQV RVRFAVHGAA IRVKELSPTV SNEMLYHAFS HFGDVERAVH IVDEKGRPTG 120
121 EGIVEFERKP NCNEAMAAIR DKVFLLTASP KPLICEVLEP R
|
| Detection Method: | |
| Confidence: | 31.522879 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [272-374] |
1 11 21 31 41 51
| | | | | |
1 DEDDGLAERM IPRTPGLSKE RELGPRFPTP NSFEYVYGMK WKELYVVEQK RRAQLDEELR 60
61 ESRRRLESDM ELAYQDYQAQ MLREGYLMFF LLFFWFRALF FFF
|
| Detection Method: | |
| Confidence: | 11.39794 |
| Match: | 2d9pA |
| Description: | No description for 2d9pA was found. |
