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Protein Overview: CE31839

General Information:
Name(s) found: CE31839 [WormBase]
Description(s) found:
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  • WBGene00013231 status:Confirmed UniProt:Q9U218 protein_id:CAB60523.3 [WormBase]
  • gi|32564508|ref|NP_499543.2| hypothetical protein Y56A3A.11 [Caenorhabditis elegans] [NCBI NR]
  • gi|22859114|emb|CAB60523.3| C. elegans protein Y56A3A.11, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep88.fasta]
  • CE31839 WBGene00013231 status:Confirmed TR:Q9U218 protein_id:CAB60523.3 [wormpep150.fasta]
  • 31839 WBGene00013231 status:Confirmed TR:Q9U218 protein_id:CAB60523.3 [wormpep130-phg-ecoli-orf-rand.fasta]
  • tRNA intron endonuclease, catalytic C-terminal (31.4 kD) (3M984) [Caenorhabditis elegans]gi|22859114|emb|CAB60523.3| Hypothetical protein Y56A3A.11 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Confirmed TR:Q9U218 protein_id:CAB60523.3 [wormpep115.fasta.reversed]
  • CE31839 WBGene00013231 status:Confirmed UniProt:Q9U218_CAEEL protein_id:CAB60523.3 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE31839 WBGene00013231 status:Confirmed UniProt:Q9U218_CAEEL protein_id:CAB60523.3| [wormORF-contam.fasta]
  • Hypothetical protein Y56A3A.11 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Y56A3A.11 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE31839 WBGene00013231 status:Confirmed UniProt:Q9U218 protein_id:CAB60523.3 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE31839 WBGene00013231 locus:tsen-2 status:Confirmed UniProt:Q9U218 protein_id:CAB60523.3 [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
  • Trna (TRNA) Splicing ENdonuclease subunit related OS=Caenorhabditis elegans GN=tsen-2 PE=1 SV=3 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 278 amino acids

    Gene Ontology:
    Cellular Component: tRNA-intron endonuclease complex [IEALink to PubMed article]
    Biological Process: tRNA splicing, via endonucleolytic cleavage and ligation [IEALink to PubMed article]
    Molecular Function: tRNA-intron endonuclease activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLVFDAKR NGNHRHVAGR VPVALNKEDL EEVLGFRRID AFLNGGLVEI FDETASRIIH  60
   61 EMSGIGQWLK DERKESRGVS RSCFSQSCGE PNGKLNEQAA NEWAELSPIA RTLVLTPIET 120
  121 ALLSIDWKII NVVKNGKISL SDEEIWTEMR NLYDNPKEFG KVFSVFRFLK MNGWIVTSGH 180
  181 TFGCDYLIYC LGAEFYHSSA GVLIADVIDP RRLLTLTRIL SHNKKALIVA TTTSEVECFE 240
  241 DANAVDVKIS TMKTYFLERD VAQMSNRCNE VYELNTVD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..278] PSI-BLAST 26.69897 Structure Determination of the Dimeric Endonuclease in a Pseudo-face-centerd P21212 space group


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle