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View Structure Prediction Details

Protein: CE31839
Organism: Caenorhabditis elegans
Length: 278 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE31839.

Description E-value Query
Range
Subject
Range
gi|187028869, gi... - gi|39584838|emb|CAE67733.1| Hypothetical protein CBG13308 [Caenorhabditis briggsae], gi|187028869|em...
gi|157773929 - gi|157773929|ref|XP_001665030.1| hypothetical protein CBG13308 [Caenorhabditis briggsae AF16]
251.0 [0..1] [263..1]

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Predicted Domain #1
Region A:
Residues: [1-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLVFDAKR NGNHRHVAGR VPVALNKEDL EEVLGFRRID AFLNGGLVEI FDETASRIIH  60
   61 EMSGIGQWLK DERKESRGVS RSCFSQSCGE PNGKLNEQAA NEWAELSPIA RTLVLTPIET 120
  121 ALLSIDWKII NVVKNGKISL SDEEIWTEMR NLYDNPKEFG KVFSVFRFLK MNGWIVTSGH 180
  181 TFGCDYLIYC LGAEFYHSSA GVLIADVIDP RRLLTLTRIL SHNKKALIVA TTTSEVECFE 240
  241 DANAVDVKIS TMKTYFLERD VAQMSNRCNE VYELNTVD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.69897
Match: 1r0vA
Description: Structure Determination of the Dimeric Endonuclease in a Pseudo-face-centerd P21212 space group
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle