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Protein Overview: pbo-5

General Information:
Name(s) found: pbo-5 / CE32021 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00012857 locus:pbo-5 Proton-gated ion channel subunit pbo-5 status:Partially_confirmed UniProt:G5ECT0 protein_id:CAA22072.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 504 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter receptor activity [IEALink to PubMed article]
    extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRLSILQHL LTFLILSKIN ATSTTESYFD SSEEAPNVLL NHLNNESEGE ELTQINDTQP  60
   61 AFVPGSSKRL TEYLLSRHNL NAPPDGLLYV EYELELVHIL GIDELKQTMT VLIYVDEHWV 120
  121 DPSLTWDPAL FGGITKTWIP LDKIWVPDII VFNMLAHEDL LSAVRAPARI HYNGTIVASH 180
  181 PAVHTVSCEI NIRHFPLDDQ RCAIEIASWA YGQEKIRLHA HTDHSLEHYK RNEEWHLLNL 240
  241 NVSEEKYEHE GVEVSEVKFE ISLKRRPLFY MVTLTFPSYI MCAISVVGLF ARFSTTGERE 300
  301 ERFTLGVTAI LTMAVLSLVV SEKVPHSSTH VPLLVAYFLF NMVIVSIAAM TTGIVMKVHR 360
  361 LGRYGDEPSD FWMRCFLLKP VFRTSNRRKY RMNPEEPTQV ILVSEAKNGE VLTKKSTELN 420
  421 GTVVKEIMLS SRLEALEEYI RKMVNRCETI KWELDEIDAA ENIELVRRRS TNGYVRISER 480
  481 LDILFMFLFL STVTIPVAVL FYLT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..368] PSI-BLAST 72.221849 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.
    2 View Details [369..504] PSI-BLAST 38.522879 Acetylcholine receptor protein, beta chain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • beta-amyloid binding
    		•  2.54213155474327 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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