| Protein: | pbo-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 504 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pbo-5.
| Description | E-value | Query Range |
Subject Range |
|
|
382.0 | [0..61] | [503..99] |
|
Region A: Residues: [1-368] |
1 11 21 31 41 51
| | | | | |
1 MTRLSILQHL LTFLILSKIN ATSTTESYFD SSEEAPNVLL NHLNNESEGE ELTQINDTQP 60
61 AFVPGSSKRL TEYLLSRHNL NAPPDGLLYV EYELELVHIL GIDELKQTMT VLIYVDEHWV 120
121 DPSLTWDPAL FGGITKTWIP LDKIWVPDII VFNMLAHEDL LSAVRAPARI HYNGTIVASH 180
181 PAVHTVSCEI NIRHFPLDDQ RCAIEIASWA YGQEKIRLHA HTDHSLEHYK RNEEWHLLNL 240
241 NVSEEKYEHE GVEVSEVKFE ISLKRRPLFY MVTLTFPSYI MCAISVVGLF ARFSTTGERE 300
301 ERFTLGVTAI LTMAVLSLVV SEKVPHSSTH VPLLVAYFLF NMVIVSIAAM TTGIVMKVHR 360
361 LGRYGDEP
|
| Detection Method: |  |
| Confidence: | 72.221849 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [369-504] |
1 11 21 31 41 51
| | | | | |
1 SDFWMRCFLL KPVFRTSNRR KYRMNPEEPT QVILVSEAKN GEVLTKKSTE LNGTVVKEIM 60
61 LSSRLEALEE YIRKMVNRCE TIKWELDEID AAENIELVRR RSTNGYVRIS ERLDILFMFL 120
121 FLSTVTIPVA VLFYLT
|
| Detection Method: | |
| Confidence: | 38.522879 |
| Match: | 1oedB |
| Description: | Acetylcholine receptor protein, beta chain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| beta-amyloid binding | 2.54213155474327 | bayes_pls_golite062009 |
