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Protein Overview: lgc-55

General Information:
Name(s) found: lgc-55 / CE32005 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00013746 locus:lgc-55 status:Partially_confirmed UniProt:G5EEC1 protein_id:CAB60486.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 538 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter receptor activity [IEALink to PubMed article]
    extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFSFILTFT ISVVAAFDDE CIKCDLRSSY CKTWENSTQS CECRDGFARI SNGSCAMVSD  60
   61 LARGGLGLSQ DSEEDEPFCV LGQAEKAATR ILTELLSKYD RNLVPKMKGV DVDVELLIQR 120
  121 VSEISEIQSS STMHILFSQI WHDPGLSFEH EEGAHCLTNL SLSHRMVDNI WLPNVCIVNS 180
  181 KGSAIHKSPT PNIFLAIFPN GTVWMNYRVV VESPCEMDFS FFPMDRVMCT TIFESYAFNV 240
  241 GKVRLHWKRQ GQPVEFIDDV KLPDFHMTKF VHEKATFIYP AGVWDQLNIK LLFRRSYGFY 300
  301 ILQIYLPTYC MVLISWISFW LDRRSLPARV TLGVSSLMAL TLQYSNVSRS LPKVSYVKGL 360
  361 DLFMFGCIVY IFLSIVELAV VGSLEQRKQQ RTNADGDFLS DDDIKKNIFQ RTFSTKSFKS 420
  421 GYGARHHQFS ECASPEDGGE WPKTRTEWAE RTYVECPEPE PPESNRHPEV ENDSNNKMLV 480
  481 LVRQRRASRK RRKRLMSGKL FQRWTAEDMD RFCQKLFPIT FTFCNLIYWM YYTAKSKD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..76] deduced N/A No confident structure predictions are available.
    2 View Details [77..414] PSI-BLAST 68.522879 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.
    3 View Details [415..538] PSI-BLAST 33.39794 Acetylcholine receptor protein, beta chain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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