YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-55
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.87
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFSFILTFT ISVVAAFDDE CIKCDLRSSY CKTWENSTQS CECRDGFARI SNGSCAMVSD  60
   61 LARGGLGLSQ DSEEDEPFCV LGQAEKAATR ILTELLSKYD RNLVPKMKGV DVDVELLIQR 120
  121 VSEISEIQSS STMHILFSQI WHDPGLSFEH EEGAHCLTNL SLSHRMVDNI WLPNVCIVNS 180
  181 KGSAIHKSPT PNIFLAIFPN GTVWMNYRVV VESPCEMDFS FFPMDRVMCT TIFESYAFNV 240
  241 GKVRLHWKRQ GQPVEFIDDV KLPDFHMTKF VHEKATFIYP AGVWDQLNIK LLFRRSYGFY 300
  301 ILQIYLPTYC MVLISWISFW LDRRSLPARV TLGVSSLMAL TLQYSNVSRS LPKVSYVKGL 360
  361 DLFMFGCIVY IFLSIVELAV VGSLEQRKQQ RTNADGDFLS DDDIKKNIFQ RTFSTKSFKS 420
  421 GYGARHHQFS ECASPEDGGE WPKTRTEWAE RTYVECPEPE PPESNRHPEV ENDSNNKMLV 480
  481 LVRQRRASRK RRKRLMSGKL FQRWTAEDMD RFCQKLFPIT FTFCNLIYWM YYTAKSKD

Type	Start	End	Confidence
Signal Peptide	1	16	0.85
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	296	0.94
Transmembrane Helix	297	320	0.88
Cytoplasmic	321	327	0.76
Transmembrane Helix	328	347	0.76
Non-Cytoplasmic	348	361	0.70
Transmembrane Helix	362	382	0.94
Cytoplasmic	383	511	0.78
Transmembrane Helix	512	532	0.42
Non-Cytoplasmic	533	538	0.60