| Protein: | lgc-55 |
| Organism: | Caenorhabditis elegans |
| Length: | 538 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lgc-55.
| Description | E-value | Query Range |
Subject Range |
|
|
357.0 | [0..1] | [538..1] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MVFSFILTFT ISVVAAFDDE CIKCDLRSSY CKTWENSTQS CECRDGFARI SNGSCAMVSD 60
61 LARGGLGLSQ DSEEDE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [77-414] |
1 11 21 31 41 51
| | | | | |
1 PFCVLGQAEK AATRILTELL SKYDRNLVPK MKGVDVDVEL LIQRVSEISE IQSSSTMHIL 60
61 FSQIWHDPGL SFEHEEGAHC LTNLSLSHRM VDNIWLPNVC IVNSKGSAIH KSPTPNIFLA 120
121 IFPNGTVWMN YRVVVESPCE MDFSFFPMDR VMCTTIFESY AFNVGKVRLH WKRQGQPVEF 180
181 IDDVKLPDFH MTKFVHEKAT FIYPAGVWDQ LNIKLLFRRS YGFYILQIYL PTYCMVLISW 240
241 ISFWLDRRSL PARVTLGVSS LMALTLQYSN VSRSLPKVSY VKGLDLFMFG CIVYIFLSIV 300
301 ELAVVGSLEQ RKQQRTNADG DFLSDDDIKK NIFQRTFS
|
| Detection Method: | |
| Confidence: | 68.522879 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [415-538] |
1 11 21 31 41 51
| | | | | |
1 TKSFKSGYGA RHHQFSECAS PEDGGEWPKT RTEWAERTYV ECPEPEPPES NRHPEVENDS 60
61 NNKMLVLVRQ RRASRKRRKR LMSGKLFQRW TAEDMDRFCQ KLFPITFTFC NLIYWMYYTA 120
121 KSKD
|
| Detection Method: | |
| Confidence: | 33.39794 |
| Match: | 1oedB |
| Description: | Acetylcholine receptor protein, beta chain |
Matching Structure (courtesy of the PDB): |
|
