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Protein Overview: rsp-3

General Information:
Name(s) found: rsp-3 / CE31089 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00004700 locus:rsp-3 Probable splicing factor, arginine\/serine-rich 3 status:Confirmed UniProt:Q9NEW6 protein_id:CAC35847.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 258 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    mRNA splice site selection [ISSLink to PubMed article]
    mRNA processing [ISSLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRGGSEDQK VYVGNLPGDV REKEVEDIFH KYGRIKYVDI KSGRGPAFAF VEFEDHRDAE  60
   61 DAVRARDGYE FDGRRIRVEF TRGVGPRGPG GRPLQDGGDH RGGDFRGGRG GGRGGGPQRR 120
  121 TGYRVIVEGL PPTGSWQDLK DHMRDAGDVC YADVARDGTG VVEFTRYEDV KYAVRKLDDT 180
  181 KFRSHEGETA YIRVREDNSS GGGSGGGGRD RSRSRSPRAE RRASPKYSPR RSRSRSRSRS 240
  241 RSRSRSASRS PSRSPSPQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] FFAS03 4.16 Solution structure of the second RNA binding domain from hypothetical protein BAB23448
    2 View Details [107..258] PSI-BLAST 7.0 Solution structure of RRM domain in splicing factor 2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  3.34870750250065 bayes_pls_golite062009
  • mRNA binding
    		•  2.2556060103472 bayes_pls_golite062009
  • binding
    		•  1.99283529634323 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.93425362052471 bayes_pls_golite062009
    		• 0.615027625039882 bayes_pls_golite062009
  • protein binding
    		•  0.546965532685613 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.230010156538648 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.00291674989822255 bayes_pls_golite062009
    2
    Term Confidence Notes
  • RNA binding
    		•  3.75748736237159 bayes_pls_golite062009
  • mRNA binding
    		•  2.67679675039933 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.20292754034443 bayes_pls_golite062009
  • binding
    		•  2.15650498181278 bayes_pls_golite062009
    		• 0.84389121154917 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.61170301639809 bayes_pls_golite062009
  • protein binding
    		•  0.611064526250178 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.40943492051131 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle