| Protein: | rsp-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 258 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsp-3.
| Description | E-value | Query Range |
Subject Range |
|
|
189.0 | [0..1] | [258..183] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MPRGGSEDQK VYVGNLPGDV REKEVEDIFH KYGRIKYVDI KSGRGPAFAF VEFEDHRDAE 60
61 DAVRARDGYE FDGRRIRVEF TRGVGPRGPG GRPLQDGGDH RGGDFR
|
| Detection Method: |  |
| Confidence: | 4.16 |
| Match: | 1whxA |
| Description: | Solution structure of the second RNA binding domain from hypothetical protein BAB23448 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.34870750250065 | bayes_pls_golite062009 |
| mRNA binding | 2.2556060103472 | bayes_pls_golite062009 |
| binding | 1.99283529634323 | bayes_pls_golite062009 |
| nucleic acid binding | 1.93425362052471 | bayes_pls_golite062009 |
| 0.615027625039882 | bayes_pls_golite062009 | |
| protein binding | 0.546965532685613 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.230010156538648 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.00291674989822255 | bayes_pls_golite062009 |
|
Region A: Residues: [107-258] |
1 11 21 31 41 51
| | | | | |
1 GGRGGGRGGG PQRRTGYRVI VEGLPPTGSW QDLKDHMRDA GDVCYADVAR DGTGVVEFTR 60
61 YEDVKYAVRK LDDTKFRSHE GETAYIRVRE DNSSGGGSGG GGRDRSRSRS PRAERRASPK 120
121 YSPRRSRSRS RSRSRSRSRS ASRSPSRSPS PQ
|
| Detection Method: | |
| Confidence: | 7.0 |
| Match: | 1x4cA |
| Description: | Solution structure of RRM domain in splicing factor 2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.75748736237159 | bayes_pls_golite062009 |
| mRNA binding | 2.67679675039933 | bayes_pls_golite062009 |
| nucleic acid binding | 2.20292754034443 | bayes_pls_golite062009 |
| binding | 2.15650498181278 | bayes_pls_golite062009 |
| 0.84389121154917 | bayes_pls_golite062009 | |
| single-stranded RNA binding | 0.61170301639809 | bayes_pls_golite062009 |
| protein binding | 0.611064526250178 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.40943492051131 | bayes_pls_golite062009 |
