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Protein Overview: bbs-8

General Information:
Name(s) found: bbs-8 / CE31071 [WormBase]
Description(s) found:
Found 16 descriptions.
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  • WBGene00000244 locus:bbs-8 status:Partially_confirmed UniProt:Q23049 protein_id:CCD74239.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 506 amino acids

    Gene Ontology:
    Cellular Component: COPI vesicle coat [IEALink to PubMed article]
    Biological Process: proteolysis [IEALink to PubMed article]
    response to stress [IEALink to PubMed article]
    Molecular Function: subtilase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGESVIEFT GFIKACRLFR ENRLAEAEAV CTNLLRKNPL DQATWALKMQ CLSDSTYVDE  60
   61 LENEDMGLAE TFLDQNVIAP NARPGTSFAR PKTSAKGVNP ILRPTTNAGR PLSGVVRPQS 120
  121 SFKSGSMDQA VRTARTAKTA RAVSSTSARN MRLGTASMAA GADGEFVNLA RLNIDKYAAD 180
  181 PQVNRQLFEY VFYYLNDIRV AHQIAGTASK AAGFEDYYWK NQLAKCYLRL GMLQDATKQL 240
  241 QSSLEQKKLI ETFALLSKAY NRVDQPMAAL KTYSAGLEVF PENVTMLTGM ARVQEALGEY 300
  301 DESVKLYKRV LDAESNNIEA IACVATTYYY GGKPELAMRY YRRILQMGVS SPELFLNIGL 360
  361 CCMAAQQFDF ALSSILRAQS TMTDDVAADV WYNIGQILVD IGDLVSAARS FRIALSHDPD 420
  421 HSESLVNLGI LKHREGKIDE ARSLYSSATS KNPYMFEGNY NLGLVSFTQG KYHECRELIE 480
  481 KALAAFPEHE HCKKILNHLK PLYESI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..436] PSI-BLAST 57.0 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    2 View Details [437..506] PSI-BLAST 20.522879 Designed protein cTPR3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.93197588899451 bayes_pls_golite062009
  • protein binding
    		•  1.65083457326273 bayes_pls_golite062009
  • signal sequence binding
    		•  0.76823910767502 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle