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Protein Overview: lgc-40

General Information:
Name(s) found: lgc-40 / CE31248 [WormBase]
Description(s) found:
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  • WBGene00020767 locus:lgc-40 status:Partially_confirmed UniProt:Q22741 protein_id:CCD71459.1 [WormBase]
  • gi|25151135|ref|NP_508428.2| Ligand-Gated ion Channel family member (lgc-40) [Caenorhabditis elegans] [NCBI NR]
  • gi|21629430|gb|AAA81448.2| Hypothetical protein T24D8.1 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep88.fasta]
  • CE31248 WBGene00020767 gamma-aminobutyric-acid receptor status:Partially_confirmed TR:Q22741 protein_id:AAA81448.2 [wormpep150.fasta]
  • 31248 WBGene00020767 gamma-aminobutyric-acid receptor status:Partially_confirmed TR:Q22741 protein_id:AAA81448.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • glycine receptor family member (57.0 kD) (XC983) [Caenorhabditis elegans]gi|21629430|gb|AAA81448.2| Hypothetical protein T24D8.1 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • gamma-aminobutyric-acid receptor status:Partially_confirmed TR:Q22741 protein_id:AAA81448.2 [wormpep115.fasta.reversed]
  • CE31248 WBGene00020767 locus:lgc-40 gamma-aminobutyric-acid receptor status:Partially_confirmed UniProt:Q22741_CAEEL protein_id:AAA81448.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE31248 WBGene00020767 locus:lgc-40 gamma-aminobutyric-acid receptor status:Partially_confirmed UniProt:Q22741_CAEEL protein_id:AAA81448.2| [wormORF-contam.fasta]
  • Hypothetical protein T24D8.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • T24D8.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE31248 WBGene00020767 locus:lgc-40 gamma-aminobutyric-acid receptor status:Partially_confirmed UniProt:Q22741 protein_id:AAA81448.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE31248 WBGene00020767 locus:lgc-40 gamma-aminobutyric-acid receptor status:Partially_confirmed UniProt:Q22741 protein_id:CCD71459.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE31248 WBGene00020767 locus:lgc-40 status:Partially_confirmed UniProt:Q22741 protein_id:CCD71459.1 [wormpep246-ecoli-contam.fasta]
  • Ligand-Gated ion Channel OS=Caenorhabditis elegans GN=lgc-40 PE=3 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 494 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter receptor activity [IEALink to PubMed article]
    extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLHTMIRFL LSVCCIVNVF ESADLAFIPL TKAFLDKLKN ETLYNRFATP TQYDGVPTNV  60
   61 TLSMFIEGMS SFSAQTMDYH LDVYFQEEWY DHRLAHNASA PILVRDLTVF KMMWHPDVYF 120
  121 ANARSAAFQD ITDDNFLVWV YPNGRVWYDA RISIVSSCNM DLWKYPLDSQ ECALRILSYA 180
  181 YPMTVLRLLW SEKEDVPAID RNPDITMPDM SLKHIRTGYC NGTYATGEWS CMTAIFYVER 240
  241 EMMHHVMQTY VPTALIVVIS WFNFWLEIDS APARVSLSIT TLLTISTQAN AVKLALPEVS 300
  301 YMKAIDVWMG SCMAFVFGVM IEFTICHYAK NLEMLRGDGQ PSLIVDTALS TLFGAARDID 360
  361 DLVRKVATLN EEEGVRGDGE QHIALNMLNP EEPRLRSLNQ NNDVTANGTR YFVGAERMKR 420
  421 KRSKASLSRL RQQVASMRHA TIDVSRRAFN WTRALRNLRG RRVAQRIDER CRIVFPMIFL 480
  481 LFNVAYWSFY LVFN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..356] PSI-BLAST 68.221849 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.
    2 View Details [357..494] PSI-BLAST 35.045757 Acetylcholine receptor protein, beta chain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle