| Protein: | lgc-40 |
| Organism: | Caenorhabditis elegans |
| Length: | 494 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lgc-40.
| Description | E-value | Query Range |
Subject Range |
|
|
359.0 | [0..27] | [488..101] |
|
Region A: Residues: [1-356] |
1 11 21 31 41 51
| | | | | |
1 MKLHTMIRFL LSVCCIVNVF ESADLAFIPL TKAFLDKLKN ETLYNRFATP TQYDGVPTNV 60
61 TLSMFIEGMS SFSAQTMDYH LDVYFQEEWY DHRLAHNASA PILVRDLTVF KMMWHPDVYF 120
121 ANARSAAFQD ITDDNFLVWV YPNGRVWYDA RISIVSSCNM DLWKYPLDSQ ECALRILSYA 180
181 YPMTVLRLLW SEKEDVPAID RNPDITMPDM SLKHIRTGYC NGTYATGEWS CMTAIFYVER 240
241 EMMHHVMQTY VPTALIVVIS WFNFWLEIDS APARVSLSIT TLLTISTQAN AVKLALPEVS 300
301 YMKAIDVWMG SCMAFVFGVM IEFTICHYAK NLEMLRGDGQ PSLIVDTALS TLFGAA
|
| Detection Method: |  |
| Confidence: | 68.221849 |
| Match: | 2bg9A |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [357-494] |
1 11 21 31 41 51
| | | | | |
1 RDIDDLVRKV ATLNEEEGVR GDGEQHIALN MLNPEEPRLR SLNQNNDVTA NGTRYFVGAE 60
61 RMKRKRSKAS LSRLRQQVAS MRHATIDVSR RAFNWTRALR NLRGRRVAQR IDERCRIVFP 120
121 MIFLLFNVAY WSFYLVFN
|
| Detection Method: | |
| Confidence: | 35.045757 |
| Match: | 1oedB |
| Description: | Acetylcholine receptor protein, beta chain |
Matching Structure (courtesy of the PDB): |
|
