YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-40
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.78
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLHTMIRFL LSVCCIVNVF ESADLAFIPL TKAFLDKLKN ETLYNRFATP TQYDGVPTNV  60
   61 TLSMFIEGMS SFSAQTMDYH LDVYFQEEWY DHRLAHNASA PILVRDLTVF KMMWHPDVYF 120
  121 ANARSAAFQD ITDDNFLVWV YPNGRVWYDA RISIVSSCNM DLWKYPLDSQ ECALRILSYA 180
  181 YPMTVLRLLW SEKEDVPAID RNPDITMPDM SLKHIRTGYC NGTYATGEWS CMTAIFYVER 240
  241 EMMHHVMQTY VPTALIVVIS WFNFWLEIDS APARVSLSIT TLLTISTQAN AVKLALPEVS 300
  301 YMKAIDVWMG SCMAFVFGVM IEFTICHYAK NLEMLRGDGQ PSLIVDTALS TLFGAARDID 360
  361 DLVRKVATLN EEEGVRGDGE QHIALNMLNP EEPRLRSLNQ NNDVTANGTR YFVGAERMKR 420
  421 KRSKASLSRL RQQVASMRHA TIDVSRRAFN WTRALRNLRG RRVAQRIDER CRIVFPMIFL 480
  481 LFNVAYWSFY LVFN

Type	Start	End	Confidence
Signal Peptide	1	23	0.76
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	245	0.82
Transmembrane Helix	246	265	0.88
Cytoplasmic	266	274	0.65
Transmembrane Helix	275	296	0.69
Non-Cytoplasmic	297	303	0.91
Transmembrane Helix	304	326	0.89
Cytoplasmic	327	470	0.98
Transmembrane Helix	471	490	0.95
Non-Cytoplasmic	491	494	0.72