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Protein Overview: skn-1

General Information:
Name(s) found: skn-1 / CE31238 [WormBase]
Description(s) found:
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  • WBGene00004804 locus:skn-1 Protein skinhead-1 status:Confirmed UniProt:P34707 protein_id:CCD62213.1 [WormBase]
  • gi|25148072|ref|NP_741406.1| SKiNhead family member (skn-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|21693909|gb|AAM75365.1|U42843_3 Skinhead protein 1, isoform b [Caenorhabditis elegans] [NCBI NR]
  • [wormpep88.fasta]
  • CE31238 WBGene00004804 locus:skn-1 status:Partially_confirmed SW:P34707 protein_id:AAM75365.1 [wormpep150.fasta]
  • 31238 WBGene00004804 locus:skn-1 status:Partially_confirmed TR:Q8MPW2 protein_id:AAM75365.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • the Binding Domain Of Skn-1 In Complex With A New Dna-Binding Motif like, SKiNhead SKN-1 (34.6 kD) (skn-1) [Caenorhabditis elegans]gi|21693909|gb|AAM75365.1| Skinhead protein 1, isoform b [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • 31238 WBGene00004804 locus:skn-1 status:Partially_confirmed SW:P34707 protein_id:AAM75365.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • locus:skn-1 status:Partially_confirmed TR:Q8MPW2 protein_id:AAM75365.1 [wormpep115.fasta.reversed]
  • CE31238 WBGene00004804 locus:skn-1 status:Confirmed UniProt:SKN1_CAEEL protein_id:AAM75365.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE31238 WBGene00004804 locus:skn-1 status:Confirmed UniProt:SKN1_CAEEL protein_id:AAM75365.1| [wormORF-contam.fasta]
  • Skinhead protein 1, isoform b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • SKiNhead family member (skn-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE31238 WBGene00004804 locus:skn-1 status:Confirmed UniProt:P34707 protein_id:AAM75365.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE31238 WBGene00004804 locus:skn-1 status:Confirmed UniProt:P34707 protein_id:CCD62213.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE31238 WBGene00004804 locus:skn-1 status:Confirmed UniProt:P34707 protein_id:CCD62213.1 Protein skinhead-1 [wormpep246-ecoli-contam.fasta]
  • Isoform of P34707, Isoform b of Protein skinhead-1 OS=Caenorhabditis elegans GN=skn-1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 310 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article][IEALink to PubMed article]
    Biological Process: response to oxidative stress [IEPLink to PubMed article][IMPLink to PubMed article]
    response to heat [IEPLink to PubMed article][IMPLink to PubMed article]
    determination of adult lifespan [IMPLink to PubMed article]
    embryonic pattern specification [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article]
    positive regulation of transcription from RNA polymerase II promoter [IMPLink to PubMed article]
    cell fate specification [IMPLink to PubMed article]
    mesendoderm development [TASLink to PubMed article]
    response to herbicide [IEPLink to PubMed article][IMPLink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    RNA polymerase II transcription factor activity, enhancer binding [IDALink to PubMed article]
    double-stranded DNA binding [IDALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]
    protein dimerization activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPSDFASS LLASSTTTNT TNTAPAAVNS FDEQEEESKK ILNMYLQMFN QQQVDQHGHH  60
   61 HQHPYAYSGV SSTFDRVFPT SNYAYIGMQN DSLQAVVSNG QIDYDHSYQS TGQTPLSPLI 120
  121 IGSSGRQQQT QTSPGSVTVT ATATQSLFDP YHSQRHSFSD CTTDSSSTCS RLSSESPRYT 180
  181 SESSTGTHES RFYGKLAPSS GSRYQRSSSP RSSQSSIKIA RVVPLASGQR KRGRQSKDEQ 240
  241 LASDNELPVS AFQISEMSLS ELQQVLKNES LSEYQRQLIR KIRRRGKNKV AARTCRQRRT 300
  301 DRHDKMSHYI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..229] MSA 12.100996 View MSA. No confident structure predictions are available.
    2 View Details [230..310] PSI-BLAST 23.522879 Skn-1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.596155562732805 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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