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Protein Overview: lgc-47

General Information:
Name(s) found: lgc-47 / CE31524 [WormBase]
Description(s) found:
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  • WBGene00009799 locus:lgc-47 status:Confirmed UniProt:G5EEX8 protein_id:CAD44128.1 [WormBase]
  • gi|25152182|ref|NP_741878.1| Ligand-Gated ion Channel family member (lgc-47) [Caenorhabditis elegans] [NCBI NR]
  • gi|22265858|emb|CAD44128.1| C. elegans protein F47A4.1b, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|22265774|emb|CAD44131.1| C. elegans protein F47A4.1b, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep88.fasta]
  • CE31524 WBGene00009799 ligand gated ion channel status:Partially_confirmed TR:Q8MM20 protein_id:CAD44128.1 [wormpep150.fasta]
  • 31524 WBGene00009799 ligand gated ion channel status:Predicted TR:Q8MM20 protein_id:CAD44128.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • gamma-aminobutyric acid receptor rho family member (XK420) [Caenorhabditis elegans]gi|22265858|emb|CAD44128.1| Hypothetical protein F47A4.1b [Caenorhabditis elegans]gi|22265774|emb|CAD44131.1| Hypothetical protein F47A4.1b [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE31524 WBGene00009799 ligand gated ion channel status:Predicted TR:Q8MM20 protein_id:CAD44128.1 [wormpep132.fasta]
  • 31524 WBGene00009799 ligand gated ion channel status:Partially_confirmed TR:Q8MM20 protein_id:CAD44128.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • ligand gated ion channel status:Partially_confirmed TR:Q8MM20 protein_id:CAD44128.1 [wormpep115.fasta.reversed]
  • CE31524 WBGene00009799 locus:lgc-47 ligand gated ion channel status:Partially_confirmed UniProt:Q8MM20_CAEEL protein_id:CAD44131.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE31524 WBGene00009799 locus:lgc-47 ligand gated ion channel status:Partially_confirmed UniProt:Q8MM20_CAEEL protein_id:CAD44131.1| [wormORF-contam.fasta]
  • F47A4.1b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein F47A4.1b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE31524 WBGene00009799 locus:lgc-47 ligand gated ion channel status:Partially_confirmed UniProt:Q8MM20 protein_id:CAD44131.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE31524 WBGene00009799 locus:lgc-47 ligand gated ion channel status:Confirmed UniProt:G5EEX8 protein_id:CAD44128.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE31524 WBGene00009799 locus:lgc-47 status:Confirmed UniProt:G5EEX8 protein_id:CAD44128.1 [wormpep246-ecoli-contam.fasta]
  • Ligand-Gated ion Channel OS=Caenorhabditis elegans GN=lgc-47 PE=3 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 428 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter receptor activity [IEALink to PubMed article]
    extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPSFVTQNT KTTRIQSFTM LSTLFLLLYA TRETVNAMTA EISPTVSYLL DRGCANDTEI  60
   61 IDHLLIDRAL YYNKHKLPSP QVDVRIEMWV QEVTSVSELT QDFEIDLYMN EYWTDPGLAY 120
  121 DILNPCQGNL SFDWAVMQNI WTPNTCFINS KKAQLHSSPF TNVFLMVFPN GSVWSNWRIK 180
  181 STGPCVMDLT KFPMDSIECT LTFESFNYNK DEVFMRWGDP PLTIFKPIEL PDFTMTNFST 240
  241 SNKFQLYAAG YWSELNVNFL FRRRSGWYLL QGYIPTYMTV FISWIPFYLG PKAIPARTMI 300
  301 GVNALLALTF QFGNIIRNLP RVSYIKAIDV WMLSGICFVF ASLFELATIG FLMRNEGKPA 360
  361 TKSSRSTKNS NRWQQPSVCR EDTQRKSQNI VFCERLDNTS RLMFPVVFTF YNFIYWFVYM 420
  421 KQAWDQAP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..428] PSI-BLAST 69.522879 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle