YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-47
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.85
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPSFVTQNT KTTRIQSFTM LSTLFLLLYA TRETVNAMTA EISPTVSYLL DRGCANDTEI  60
   61 IDHLLIDRAL YYNKHKLPSP QVDVRIEMWV QEVTSVSELT QDFEIDLYMN EYWTDPGLAY 120
  121 DILNPCQGNL SFDWAVMQNI WTPNTCFINS KKAQLHSSPF TNVFLMVFPN GSVWSNWRIK 180
  181 STGPCVMDLT KFPMDSIECT LTFESFNYNK DEVFMRWGDP PLTIFKPIEL PDFTMTNFST 240
  241 SNKFQLYAAG YWSELNVNFL FRRRSGWYLL QGYIPTYMTV FISWIPFYLG PKAIPARTMI 300
  301 GVNALLALTF QFGNIIRNLP RVSYIKAIDV WMLSGICFVF ASLFELATIG FLMRNEGKPA 360
  361 TKSSRSTKNS NRWQQPSVCR EDTQRKSQNI VFCERLDNTS RLMFPVVFTF YNFIYWFVYM 420
  421 KQAWDQAP

Type	Start	End	Confidence
Signal Peptide	1	37	0.82
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	266	0.85
Transmembrane Helix	267	288	0.91
Cytoplasmic	289	295	0.61
Transmembrane Helix	296	316	0.85
Non-Cytoplasmic	317	329	0.62
Transmembrane Helix	330	352	0.89
Cytoplasmic	353	401	0.72
Transmembrane Helix	402	419	0.81
Non-Cytoplasmic	420	428	0.61