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Protein Overview: lgc-44

General Information:
Name(s) found: lgc-44 / CE31948 [WormBase]
Description(s) found:
Found 16 descriptions.
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  • WBGene00009790 locus:lgc-44 status:Partially_confirmed UniProt:P90876 protein_id:CAB03114.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 618 amino acids

    Gene Ontology:
    Cellular Component: postsynaptic membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    integral to membrane [IEALink to PubMed article]
    Biological Process: ion transport [IEALink to PubMed article]
    transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter receptor activity [IEALink to PubMed article]
    extracellular ligand-gated ion channel activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLISISLL FLIFPHSSNP SSSNFLDIAS TYQAVDYGIA TDQHQQCLSW KLWWKTQKSL  60
   61 HDPSTADIDL LAIRRAEVWI RNEHDAEKYD VPVELLQNFT TIRIVFRNVC RLLPRVLQIS 120
  121 SPLAARRSRI TLDALCQTYN YSDPEVQELV LNNYEEAQEN AIGIDQLLFL DHQSVMIVMP 180
  181 AACNSSNSDE KEISKQYYLE KYGDFSFNVS NLNIELDKLH EMVHDFKPLD QIMNQNLGLD 240
  241 YQRPLPSSTI LPFLRKMEYD ARQPPSLHVD DTVTVKVGIA VQSMSNFELS TMDYDLDAWV 300
  301 RMSWIDPRLR HDLSRPILVN DYTFLKMIWR PDPIFTNSKY STFHKVTYLN FYLFIFPDGK 360
  361 IFMDMRVYLK PTAAQIVLCK YPHDNPAVSL KISSMGFTQD VVKLEWFSDT NDAIWIEKNV 420
  421 KIPELSIRHL HPDTCNGVRK SGVYSCLEAK FYMHREVGYH IANTYIPTAI CVVFSWISVW 480
  481 LPEEFVEGRI FVSLTVFLTL SAENNSAKEE LPKVSYVKAI DIWFGFTSTF VFLTMLQALV 540
  541 VISLEHNSKR LRLKFENNLD GYSKYQMTKS MLLSRYYHRM ARQIDTFCKV MYPVIFLLFL 600
  601 MFYVFVITQG DERKCIKN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..225] deduced N/A No confident structure predictions are available.
    2 View Details [226..618] PSI-BLAST 71.30103 Refined structure of the nicotinic acetylcholine receptor at 4A resolution.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle