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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: lgc-44
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLISISLL FLIFPHSSNP SSSNFLDIAS TYQAVDYGIA TDQHQQCLSW KLWWKTQKSL  60
   61 HDPSTADIDL LAIRRAEVWI RNEHDAEKYD VPVELLQNFT TIRIVFRNVC RLLPRVLQIS 120
  121 SPLAARRSRI TLDALCQTYN YSDPEVQELV LNNYEEAQEN AIGIDQLLFL DHQSVMIVMP 180
  181 AACNSSNSDE KEISKQYYLE KYGDFSFNVS NLNIELDKLH EMVHDFKPLD QIMNQNLGLD 240
  241 YQRPLPSSTI LPFLRKMEYD ARQPPSLHVD DTVTVKVGIA VQSMSNFELS TMDYDLDAWV 300
  301 RMSWIDPRLR HDLSRPILVN DYTFLKMIWR PDPIFTNSKY STFHKVTYLN FYLFIFPDGK 360
  361 IFMDMRVYLK PTAAQIVLCK YPHDNPAVSL KISSMGFTQD VVKLEWFSDT NDAIWIEKNV 420
  421 KIPELSIRHL HPDTCNGVRK SGVYSCLEAK FYMHREVGYH IANTYIPTAI CVVFSWISVW 480
  481 LPEEFVEGRI FVSLTVFLTL SAENNSAKEE LPKVSYVKAI DIWFGFTSTF VFLTMLQALV 540
  541 VISLEHNSKR LRLKFENNLD GYSKYQMTKS MLLSRYYHRM ARQIDTFCKV MYPVIFLLFL 600
  601 MFYVFVITQG DERKCIKN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle