| Protein: | lgc-44 |
| Organism: | Caenorhabditis elegans |
| Length: | 618 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lgc-44.
| Description | E-value | Query Range |
Subject Range |
|
|
607.0 | [0..1] | [618..1] |
|
Region A: Residues: [1-225] |
1 11 21 31 41 51
| | | | | |
1 MSLLISISLL FLIFPHSSNP SSSNFLDIAS TYQAVDYGIA TDQHQQCLSW KLWWKTQKSL 60
61 HDPSTADIDL LAIRRAEVWI RNEHDAEKYD VPVELLQNFT TIRIVFRNVC RLLPRVLQIS 120
121 SPLAARRSRI TLDALCQTYN YSDPEVQELV LNNYEEAQEN AIGIDQLLFL DHQSVMIVMP 180
181 AACNSSNSDE KEISKQYYLE KYGDFSFNVS NLNIELDKLH EMVHD
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [226-618] |
1 11 21 31 41 51
| | | | | |
1 FKPLDQIMNQ NLGLDYQRPL PSSTILPFLR KMEYDARQPP SLHVDDTVTV KVGIAVQSMS 60
61 NFELSTMDYD LDAWVRMSWI DPRLRHDLSR PILVNDYTFL KMIWRPDPIF TNSKYSTFHK 120
121 VTYLNFYLFI FPDGKIFMDM RVYLKPTAAQ IVLCKYPHDN PAVSLKISSM GFTQDVVKLE 180
181 WFSDTNDAIW IEKNVKIPEL SIRHLHPDTC NGVRKSGVYS CLEAKFYMHR EVGYHIANTY 240
241 IPTAICVVFS WISVWLPEEF VEGRIFVSLT VFLTLSAENN SAKEELPKVS YVKAIDIWFG 300
301 FTSTFVFLTM LQALVVISLE HNSKRLRLKF ENNLDGYSKY QMTKSMLLSR YYHRMARQID 360
361 TFCKVMYPVI FLLFLMFYVF VITQGDERKC IKN
|
| Detection Method: | |
| Confidence: | 71.30103 |
| Match: | 2bg9E |
| Description: | Refined structure of the nicotinic acetylcholine receptor at 4A resolution. |
Matching Structure (courtesy of the PDB): |
|
