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Protein Overview: snf-5

General Information:
Name(s) found: snf-5 / CE29609 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00004904 locus:snf-5 Transporter status:Confirmed UniProt:G5EBM5 protein_id:CAB60372.4 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 728 amino acids

    Gene Ontology:
    Cellular Component: integral to plasma membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    Biological Process: neurotransmitter transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter:sodium symporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSGSNEEA MKRQAPSVKF DSPSKPDPQQ VSQQSNQLSS QKSIQQSTQS KIDPSRIDTK  60
   61 NTTVTTTRPT LDTPPEEEEE KRDGFGNSFE FVLTSLGLAV GLGNIWRFPT RAYNNGGSAF 120
  121 LIPYLTCAFL FGLPAVYFEF LTGQYQGKSP PVIFRRVRPI LEGVGWMGVF VAALVAIYYI 180
  181 VIVSWISIYM INICRGHFAL WSHCNNDWNN GTSCITMADQ YLCKNHTKVM ANSTLWNSSL 240
  241 PIPDKMVYFN GACQDANGTD VSTATEQYFM TYIVQPSSGM LDFGGFNWPV FAAMSVCWLL 300
  301 TGLGILKGAK IMGKISYVSV LVPYVLVVVL FINGVFQDGS GVGLEMYFGT PNYTKLYEQD 360
  361 TWTEALKQLC FSLSVGHGGL ISLSSYSPKR NNIFRDALIV IIGDTTMSLV GGGAVFATLG 420
  421 YLAKATGQDV KDVVKSGLSL AFVVYPEAMT RMPVPWLWCF IFFLMLFLLG ASTEIALVDV 480
  481 FCSCIYDQYP RFRNRKWIVV IAWCSVLYCI GLVFSTRAGY YWFEMFDEYA AGFSSVCTVV 540
  541 CELLVMMYIY GFRNVRDDIT EVVGHARNKF TGAIGAHSWY FTANWMVISP SIALILVGLS 600
  601 FVREYPYMGR HDIYPAVFDI FGWFLSFLPV IIVPIFMLLN FIRCRNRGHS YRTLFMLQKQ 660
  661 HASYRRIAAN YSKDQLALQD QLPDKEPWDE ENVDLTDSES ESRNAASGDV PIDDVATIDT 720
  721 SSTYHQVY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..646] PSI-BLAST 47.522879 Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
    2 View Details [647..728] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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