YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	snf-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	88	0.97
Transmembrane Helix	89	108	0.90
Non-Cytoplasmic	109	119	0.84
Transmembrane Helix	120	141	0.93
Cytoplasmic	142	162	0.89
Transmembrane Helix	163	182	0.96
Non-Cytoplasmic	183	285	0.96
Transmembrane Helix	286	306	0.92
Cytoplasmic	307	314	0.84
Transmembrane Helix	315	336	0.90
Non-Cytoplasmic	337	364	0.93
Transmembrane Helix	365	386	0.84
Cytoplasmic	387	396	0.83
Transmembrane Helix	397	419	0.89
Non-Cytoplasmic	420	455	0.90
Transmembrane Helix	456	478	0.88
Cytoplasmic	479	496	0.84
Transmembrane Helix	497	520	0.89
Non-Cytoplasmic	521	528	0.90
Transmembrane Helix	529	552	0.90
Cytoplasmic	553	578	0.93
Transmembrane Helix	579	602	0.87
Non-Cytoplasmic	603	619	0.94
Transmembrane Helix	620	642	0.93
Cytoplasmic	643	728	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSGSNEEA MKRQAPSVKF DSPSKPDPQQ VSQQSNQLSS QKSIQQSTQS KIDPSRIDTK  60
   61 NTTVTTTRPT LDTPPEEEEE KRDGFGNSFE FVLTSLGLAV GLGNIWRFPT RAYNNGGSAF 120
  121 LIPYLTCAFL FGLPAVYFEF LTGQYQGKSP PVIFRRVRPI LEGVGWMGVF VAALVAIYYI 180
  181 VIVSWISIYM INICRGHFAL WSHCNNDWNN GTSCITMADQ YLCKNHTKVM ANSTLWNSSL 240
  241 PIPDKMVYFN GACQDANGTD VSTATEQYFM TYIVQPSSGM LDFGGFNWPV FAAMSVCWLL 300
  301 TGLGILKGAK IMGKISYVSV LVPYVLVVVL FINGVFQDGS GVGLEMYFGT PNYTKLYEQD 360
  361 TWTEALKQLC FSLSVGHGGL ISLSSYSPKR NNIFRDALIV IIGDTTMSLV GGGAVFATLG 420
  421 YLAKATGQDV KDVVKSGLSL AFVVYPEAMT RMPVPWLWCF IFFLMLFLLG ASTEIALVDV 480
  481 FCSCIYDQYP RFRNRKWIVV IAWCSVLYCI GLVFSTRAGY YWFEMFDEYA AGFSSVCTVV 540
  541 CELLVMMYIY GFRNVRDDIT EVVGHARNKF TGAIGAHSWY FTANWMVISP SIALILVGLS 600
  601 FVREYPYMGR HDIYPAVFDI FGWFLSFLPV IIVPIFMLLN FIRCRNRGHS YRTLFMLQKQ 660
  661 HASYRRIAAN YSKDQLALQD QLPDKEPWDE ENVDLTDSES ESRNAASGDV PIDDVATIDT 720
  721 SSTYHQVY