| Protein: | snf-5 |
| Organism: | Caenorhabditis elegans |
| Length: | 728 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snf-5.
| Description | E-value | Query Range |
Subject Range |
|
|
534.0 | [0..18] | [677..235] |
|
Region A: Residues: [1-646] |
1 11 21 31 41 51
| | | | | |
1 MADSGSNEEA MKRQAPSVKF DSPSKPDPQQ VSQQSNQLSS QKSIQQSTQS KIDPSRIDTK 60
61 NTTVTTTRPT LDTPPEEEEE KRDGFGNSFE FVLTSLGLAV GLGNIWRFPT RAYNNGGSAF 120
121 LIPYLTCAFL FGLPAVYFEF LTGQYQGKSP PVIFRRVRPI LEGVGWMGVF VAALVAIYYI 180
181 VIVSWISIYM INICRGHFAL WSHCNNDWNN GTSCITMADQ YLCKNHTKVM ANSTLWNSSL 240
241 PIPDKMVYFN GACQDANGTD VSTATEQYFM TYIVQPSSGM LDFGGFNWPV FAAMSVCWLL 300
301 TGLGILKGAK IMGKISYVSV LVPYVLVVVL FINGVFQDGS GVGLEMYFGT PNYTKLYEQD 360
361 TWTEALKQLC FSLSVGHGGL ISLSSYSPKR NNIFRDALIV IIGDTTMSLV GGGAVFATLG 420
421 YLAKATGQDV KDVVKSGLSL AFVVYPEAMT RMPVPWLWCF IFFLMLFLLG ASTEIALVDV 480
481 FCSCIYDQYP RFRNRKWIVV IAWCSVLYCI GLVFSTRAGY YWFEMFDEYA AGFSSVCTVV 540
541 CELLVMMYIY GFRNVRDDIT EVVGHARNKF TGAIGAHSWY FTANWMVISP SIALILVGLS 600
601 FVREYPYMGR HDIYPAVFDI FGWFLSFLPV IIVPIFMLLN FIRCRN
|
| Detection Method: |  |
| Confidence: | 47.522879 |
| Match: | 2a65A |
| Description: | Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [647-728] |
1 11 21 31 41 51
| | | | | |
1 RGHSYRTLFM LQKQHASYRR IAANYSKDQL ALQDQLPDKE PWDEENVDLT DSESESRNAA 60
61 SGDVPIDDVA TIDTSSTYHQ VY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
