YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: snf-1

General Information:
Name(s) found: snf-1 / CE30701 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00004900 locus:snf-1 status:Confirmed UniProt:O44752 protein_id:CCD70125.1 [WormBase]
  • gi|25143236|ref|NP_491491.2| Sodium:Neurotransmitter symporter Family family member (snf-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|20451262|gb|AAB96735.3| Sodium:neurotransmitter symporter family protein 1, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep79.fasta]
  • CE30701 WBGene00004900 locus:snf-1 neurotransmitter transporter status:Partially_confirmed TR:O44752 protein_id:AAB96735.3 [wormpep150.fasta]
  • 30701 WBGene00004900 locus:snf-1 neurotransmitter transporter status:Partially_confirmed TR:O44752 protein_id:AAB96735.3 [wormpep130-phg-ecoli-orf-rand.fasta]
  • sodium:neurotransmitter symporter family member (70.2 kD) (snf-1) [Caenorhabditis elegans]gi|20451262|gb|AAB96735.3| Sodium:neurotransmitter symporter family protein 1 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • locus:snf-1 neurotransmitter transporter status:Partially_confirmed TR:O44752 protein_id:AAB96735.3 [wormpep115.fasta.reversed]
  • CE30701 locus:snf-1 neurotransmitter transporter status:Partially_confirmed [wormpep80.hongbin]
  • CE30701 WBGene00004900 locus:snf-1 neurotransmitter transporter status:Confirmed UniProt:O44752_CAEEL protein_id:AAB96735.3 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE30701 WBGene00004900 locus:snf-1 neurotransmitter transporter status:Confirmed UniProt:O44752_CAEEL protein_id:AAB96735.3| [wormORF-contam.fasta]
  • Sodium:neurotransmitter symporter family protein 1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Sodium:Neurotransmitter symporter Family family member (snf-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE30701 WBGene00004900 locus:snf-1 neurotransmitter transporter status:Confirmed TR:O44752 protein_id:AAB96735.3 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE30701 WBGene00004900 locus:snf-1 neurotransmitter transporter status:Confirmed UniProt:O44752 protein_id:AAB96735.3 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE30701 WBGene00004900 locus:snf-1 neurotransmitter transporter status:Confirmed UniProt:O44752 protein_id:CCD70125.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE30701 WBGene00004900 locus:snf-1 status:Confirmed UniProt:O44752 protein_id:CCD70125.1 [wormpep246-ecoli-contam.fasta]
  • Sodium: Neurotransmitter symporter Family OS=Caenorhabditis elegans GN=snf-1 PE=1 SV=3 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 617 amino acids

    Gene Ontology:
    Cellular Component: integral to plasma membrane [IEALink to PubMed article]
    membrane [IEALink to PubMed article]
    Biological Process: neurotransmitter transport [IEALink to PubMed article]
    Molecular Function: neurotransmitter:sodium symporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWFEESSWSN LRLTDLVEEW RDLWPSKIEF IVSAMAYLFA MTNFLNLPKL ILENGGVAFA  60
   61 AAYAIVVGVL CMPTMVMEMS IGQVTGRAPV LAFYHLFPVF RGIGVSQILF TMVVLACMTK 120
  121 FLSTLCLFLY YYFWTFHAGR SGLPWLNCKA FPEFVSQPCR EAGSITNITQ INNRLNTIQA 180
  181 ESSMMQFLTT LERPSESIAD FKDFQYPILI AQGAIWIAIF VAICFGVRFV GKTVAFVLML 240
  241 AFSSLLVFFL RSATLGGVTE ILEIYWKATD WEKLADYQVW RLAIEQAILG TGIGYGAFIT 300
  301 MSSYMKRSNN LVCDSIFLSV WHLIISFVQT MSIICIVGYL SMKLGIHPTE LLETGEDQMW 360
  361 YMLAYVSYLP KLWSGVLLTI CICTMFSVIT ILALSVLSTF EDAFGENWSK CCRRFFLALF 420
  421 VCLFCFGLTV YFATNAGRHA YELATRSIKY CTIYFILTAE LFATAWFYCA HKLGKDLHNM 480
  481 MRSRCCSCFG HFFLYFTYLL PILPAGVAFL NALDYKFSSF SAPIHEWKYS EYVGIAIAMV 540
  541 PLIPIPLYFF MTILCACCCK GKDHAKTCKR IRTVFAARLQ NHHHRDEKAQ PIPRYTSNAP 600
  601 GYLLLPQAPL AEPEIYA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..559] PSI-BLAST 50.30103 Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
    2 View Details [560..617] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle