YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	snf-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.60
Transmembrane Helix	28	47	0.78
Non-Cytoplasmic	48	55	0.38
Transmembrane Helix	56	77	0.89
Cytoplasmic	78	107	0.46
Transmembrane Helix	108	134	0.80
Non-Cytoplasmic	135	207	0.95
Transmembrane Helix	208	227	0.94
Cytoplasmic	228	235	0.67
Transmembrane Helix	236	255	0.91
Non-Cytoplasmic	256	281	0.87
Transmembrane Helix	282	304	0.85
Cytoplasmic	305	317	0.89
Transmembrane Helix	318	340	0.91
Non-Cytoplasmic	341	371	0.93
Transmembrane Helix	372	396	0.89
Cytoplasmic	397	414	0.86
Transmembrane Helix	415	434	0.96
Non-Cytoplasmic	435	449	0.90
Transmembrane Helix	450	470	0.94
Cytoplasmic	471	490	0.87
Transmembrane Helix	491	512	0.91
Non-Cytoplasmic	513	533	0.92
Transmembrane Helix	534	557	0.87
Cytoplasmic	558	617	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWFEESSWSN LRLTDLVEEW RDLWPSKIEF IVSAMAYLFA MTNFLNLPKL ILENGGVAFA  60
   61 AAYAIVVGVL CMPTMVMEMS IGQVTGRAPV LAFYHLFPVF RGIGVSQILF TMVVLACMTK 120
  121 FLSTLCLFLY YYFWTFHAGR SGLPWLNCKA FPEFVSQPCR EAGSITNITQ INNRLNTIQA 180
  181 ESSMMQFLTT LERPSESIAD FKDFQYPILI AQGAIWIAIF VAICFGVRFV GKTVAFVLML 240
  241 AFSSLLVFFL RSATLGGVTE ILEIYWKATD WEKLADYQVW RLAIEQAILG TGIGYGAFIT 300
  301 MSSYMKRSNN LVCDSIFLSV WHLIISFVQT MSIICIVGYL SMKLGIHPTE LLETGEDQMW 360
  361 YMLAYVSYLP KLWSGVLLTI CICTMFSVIT ILALSVLSTF EDAFGENWSK CCRRFFLALF 420
  421 VCLFCFGLTV YFATNAGRHA YELATRSIKY CTIYFILTAE LFATAWFYCA HKLGKDLHNM 480
  481 MRSRCCSCFG HFFLYFTYLL PILPAGVAFL NALDYKFSSF SAPIHEWKYS EYVGIAIAMV 540
  541 PLIPIPLYFF MTILCACCCK GKDHAKTCKR IRTVFAARLQ NHHHRDEKAQ PIPRYTSNAP 600
  601 GYLLLPQAPL AEPEIYA