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Protein Overview: pccb-1

General Information:
Name(s) found: pccb-1 / CE30139 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00018701 locus:pccb-1 status:Confirmed UniProt:Q8WQF1 protein_id:CCD66478.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 522 amino acids

    Gene Ontology:
    Cellular Component: acetyl-CoA carboxylase complex [IEALink to PubMed article]
    Biological Process: sodium ion transport [IEALink to PubMed article]
    fatty acid biosynthetic process [IEALink to PubMed article]
    Molecular Function: acetyl-CoA carboxylase activity [IEALink to PubMed article]
    methylmalonyl-CoA decarboxylase activity [IEALink to PubMed article]
    ligase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSEKPTRAT SSIAHTIKVA HKIDETREKA LLGGGKKRVD AQHARGKLTA RERIDLLLDR  60
   61 NTFREYDMFA EHTCNDFGMQ KEKYPGDSVV TGRGEINGRT VFVFSQDFTV FGGSLSSIHA 120
  121 KKIVKIMREA MLVGAPVIGL NDSGGARIQE GVESLAGYAD IFQENVMASG VVPQISMIMG 180
  181 PCAGGAVYSP ALTDFTFMVR DTSYLFITGP DVVKAVTNEE VTQEELGGAK THTVTSGVAH 240
  241 GAFDNDVDAL MSLRELFNYL PLSNTDAAPI RAAEDPWDRA VPSLDTVVPL ESTAAYNMKD 300
  301 VVHALVDEGD FFEIMPDYAK NLVIGFARMN GRTVGIVGNN PKFAAGCLDI NSSVKGARFV 360
  361 RFCDAFNIPI ITLVDVPGFL PGTAQEYGGI IRHGAKLLYA FAEATVPKIT IITRKAFGGA 420
  421 YDVMSSKHLR GDINYAWPTA EVAVMGAKGA VSILFRNDKE HAVQHEEEYT ELFSNPFPAA 480
  481 VRGFVDDIII PSETRKKVCE DLNMLESKKL KNPWKKHGNI PL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..522] PSI-BLAST 166.0 Crystal structure of propionyl-CoA carboxylase, beta subunit (TM0716) from THERMOTOGA MARITIMA at 2.30 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • CoA carboxylase activity
    		•  4.38629333084302 bayes_pls_golite062009
  • acetyl-CoA carboxylase activity
    		•  4.36332808516753 bayes_pls_golite062009
  • ligase activity, forming carbon-carbon bonds
    		•  4.29345455730254 bayes_pls_golite062009
  • enoyl-CoA hydratase activity
    		•  3.92947460544831 bayes_pls_golite062009
  • methylcrotonoyl-CoA carboxylase activity
    		•  2.85169024122548 bayes_pls_golite062009
  • 3-hydroxyacyl-CoA dehydrogenase activity
    		•  2.44182589784656 bayes_pls_golite062009
  • dodecenoyl-CoA delta-isomerase activity
    		•  1.80820904754223 bayes_pls_golite062009
  • catalytic activity
    		•  1.46154163027498 bayes_pls_golite062009
  • propionyl-CoA carboxylase activity
    		•  1.20853698666984 bayes_pls_golite062009
  • ligase activity
    		•  0.98581896521131 bayes_pls_golite062009
  • binding
    		•  0.578223105269736 bayes_pls_golite062009
  • 3-hydroxybutyryl-CoA epimerase activity
    		•  0.241955774397835 bayes_pls_golite062009
  • racemase and epimerase activity, acting on hydroxy acids and derivatives
    		•  0.099208209617217 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, transposing C=C bonds
    		•  0.0918189681606029 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle