Protein Overview: rpt-4

General Information:
Name(s) found:	rpt-4 / CE29280 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00004504 locus:rpt-4 Probable 26S protease regulatory subunit 10B status:Confirmed UniProt:O17071 protein_id:CCD62357.1 [WormBase] gi\|71987364\|ref\|NP_001022113.1\| proteasome Regulatory Particle, ATPase-like family member (rpt-4) [Caenorhabditis elegans] [NCBI NR] gi\|21264496\|sp\|O17071.2\|PRS10_CAEEL RecName: Full=Probable 26S protease regulatory subunit S10B; AltName: Full=Proteasome regulatory particle ATPase-like protein 4 [NCBI NR] ref\|NP_493644.1\| proteasome Regulatory Particle, ATPase-like, S10b (rpt-4) [Caenorhabditis elegans] [NCBI NR] gi\|15617798\|gb\|AAB70326.2\| Proteasome regulatory particle, atpase-like protein 4, isoform a [Caenorhabditis elegans] [NCBI NR] (O17071) Probable 26S protease regulatory subunit S10B [Swiss-Prot] Probable 26S protease regulatory subunit 10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2 [Swiss-Prot] [wormpep67.fasta] CE29280 WBGene00004504 locus:rpt-4 status:Confirmed SW:O17071 protein_id:AAB70326.2 [wormpep150.fasta] 29280 WBGene00004504 locus:rpt-4 status:Confirmed SW:O17071 protein_id:AAB70326.2 [wormpep130-phg-ecoli-orf-rand.fasta] proteasome Regulatory Particle, ATPase-like, S10b (rpt-4) [Caenorhabditis elegans]gi\|15617798\|gb\|AAB70326.2\| Proteasome regulatory particle, atpase-like protein 4 [Caenorhabditis elegans]gi\|21264496\|sp\|O17071\|PRSX_CAEEL Probable 26S protease regulatory [nrdb_11152004_Chlamydomonas] locus:rpt-4 status:Confirmed SW:O17071 protein_id:AAB70326.2 [wormpep115.fasta.reversed] CE29280 locus:rpt-4 status:Confirmed [wormpep80.hongbin] CE29280 WBGene00004504 locus:rpt-4 status:Confirmed UniProt:PRS10_CAEEL protein_id:AAB70326.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE29280 WBGene00004504 locus:rpt-4 status:Confirmed UniProt:PRS10_CAEEL protein_id:AAB70326.2\| [wormORF-contam.fasta] proteasome Regulatory Particle, ATPase-like family member (rpt-4) [Caenorhabditis elegans] [nr-271106-contam.fasta] Probable 26S protease regulatory subunit S10B (Proteasome regulatory particle ATPase-like protein 4) [nr-271106-contam.fasta] Proteasome regulatory particle, atpase-like protein 4, isoform a [Caenorhabditis elegans] [nr-271106-contam.fasta] CE29280 WBGene00004504 locus:rpt-4 status:Confirmed UniProt:O17071 protein_id:AAB70326.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE29280 WBGene00004504 locus:rpt-4 status:Confirmed UniProt:O17071 protein_id:CCD62357.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta] CE29280 WBGene00004504 locus:rpt-4 status:Confirmed UniProt:O17071 protein_id:CCD62357.1 Probable 26S protease regulatory subunit 10B [wormpep246-ecoli-contam.fasta]
Organism:	Caenorhabditis elegans
Length:	406 amino acids
Gene Ontology:
Cellular Component:	nucleus [IEA] proteasome regulatory particle, base subcomplex [ISS] cytoplasm [IEA] membrane [IEA]
Biological Process:	DNA repair [IEA] locomotion [IMP] nematode larval development [IMP] protein catabolic process [IEA] positive regulation of growth rate [IMP] embryonic development ending in birth or egg hatching [IMP ] post-embryonic body morphogenesis [IMP] protein transport [IEA] DNA recombination [IEA] reproduction [IMP ]
Molecular Function:	nucleotide binding [IEA] ATPase activity [IEA] ATP binding [IEA] DNA binding [IEA] protein binding [IEA][IPI] nucleoside-triphosphatase activity [IEA] four-way junction helicase activity [IEA] metalloendopeptidase activity [IEA] hydrolase activity [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLQFSNMV EPTGPAIVED ERTKALNSYR RKLAECRDIE QKLKDLRKKE SEMTKQFDKS  60
   61 ENDIKSLQSV GQIVGEVLKQ LSEEKFIVKA TNGPRYVVGC RRSINKEELK QGTRVSLDMT 120
  121 TLTIMRQLPR EVDPLVYKMS HEDPGNISYS DVGGLAEQIR ELREVVELPL INPELFKRVG 180
  181 ITPPKGCLLF GPPGTGKTLL ARAVASQLDC NFLKVVSSAI VDKYIGESAR MIREMFNYAR 240
  241 DHQPCIVFMD EIDAIGGRRF SEGTSADREI QRTLMELLNQ LDGFDSLGKV KVIMATNRPD 300
  301 TLDPALLRPG RLDRKIEIGL PNEQSRLEIL KIHSNKITKH GEIDFEAVVK LSDGFSAADL 360
  361 RNVCTEAGMF AIRAEREFVI DEDFMKAVRK VGDAKRLETK LDYKPV

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..406]	PSI-BLAST	80.69897	VCP/p97

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: rpt-4

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: