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Protein Overview: CE29004

General Information:
Name(s) found: CE29004 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00022250 tRNA pseudouridine synthase status:Confirmed UniProt:Q95XD5 protein_id:CCD74175.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 322 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tRNA processing [IEALink to PubMed article]
    Molecular Function: pseudouridylate synthase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREIRRYLFW IGYDGSKFPE MAKGGTGFGV MDLLNQTIST SIFGSRCEQT PNCSDRLKFS  60
   61 PSSRTDAKVH AIRNSVICQV PLEYAELDKT PETKKAFMTS WKNTIDVANP GSLEIHDVHS 120
  121 VSAGFCIRRS VSYRKYTYRM AVCRSWELWE SIRQEPSISC FSERDYAWRL PPGFSAHKVL 180
  181 QAGKLFEGEQ VMGSFFKHTA REKRYEPISP TALKYIFHVG LSKGEAYSME NDIYDYYNVT 240
  241 IVAKSFVREQ IRRMMSCLVN YSYDRIPLTT IEWLLSNPIS SNFFDLGIPV APPQGLFLTD 300
  301 VVYDPRMFTN PEPYFLHSWD YD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..322] PSI-BLAST 80.30103 No description for 2nqpA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.49175104308599 bayes_pls_golite062009
  • isomerase activity
    		•  0.87098451300632 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  0.86450504855635 bayes_pls_golite062009
  • pseudouridine synthase activity
    		•  0.86297783328106 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle