YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE29004
Organism: Caenorhabditis elegans
Length: 322 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE29004.

Description E-value Query
Range
Subject
Range
gi|151939062, gi... - gi|75855869|ref|ZP_00763509.1| COG0101: Pseudouridylate synthase [Vibrio sp. Ex25], gi|254228474|ref...
307.0 [0..6] [318..2]

Back

Predicted Domain #1
Region A:
Residues: [1-322]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREIRRYLFW IGYDGSKFPE MAKGGTGFGV MDLLNQTIST SIFGSRCEQT PNCSDRLKFS  60
   61 PSSRTDAKVH AIRNSVICQV PLEYAELDKT PETKKAFMTS WKNTIDVANP GSLEIHDVHS 120
  121 VSAGFCIRRS VSYRKYTYRM AVCRSWELWE SIRQEPSISC FSERDYAWRL PPGFSAHKVL 180
  181 QAGKLFEGEQ VMGSFFKHTA REKRYEPISP TALKYIFHVG LSKGEAYSME NDIYDYYNVT 240
  241 IVAKSFVREQ IRRMMSCLVN YSYDRIPLTT IEWLLSNPIS SNFFDLGIPV APPQGLFLTD 300
  301 VVYDPRMFTN PEPYFLHSWD YD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.30103
Match: 2nqpA
Description: No description for 2nqpA was found.

Predicted functions:

Term Confidence Notes
catalytic activity 1.49175104308599 bayes_pls_golite062009
isomerase activity 0.87098451300632 bayes_pls_golite062009
intramolecular transferase activity 0.86450504855635 bayes_pls_golite062009
pseudouridine synthase activity 0.86297783328106 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle