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Protein Overview: CE28975

General Information:
Name(s) found: CE28975 [WormBase]
Description(s) found:
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  • WBGene00021391 locus:smut-1 status:Confirmed UniProt:Q9UAX9 protein_id:CCD69630.1 [WormBase]
  • gi|17565430|ref|NP_504574.1| hypothetical protein Y38A10A.6 [Caenorhabditis elegans] [NCBI NR]
  • gi|15375259|gb|AAK95885.1|AF125963_6 Hypothetical protein Y38A10A.6 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE28975 WBGene00021391 status:Partially_confirmed TR:Q9UAX9 protein_id:AAK95885.1 [wormpep150.fasta]
  • 28975 WBGene00021391 status:Partially_confirmed TR:Q9UAX9 protein_id:AAK95885.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • RNA helicase family member (59.0 kD) (5G579) [Caenorhabditis elegans]gi|15375259|gb|AAK95885.1| Hypothetical protein Y38A10A.6 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q9UAX9 protein_id:AAK95885.1 [wormpep115.fasta.reversed]
  • CE28975 status:Partially_confirmed TR:Q9UAX9 protein_id:AAK95885.1 [wormpep80.hongbin]
  • CE28975 WBGene00021391 status:Partially_confirmed UniProt:Q9UAX9_CAEEL protein_id:AAK95885.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE28975 WBGene00021391 status:Partially_confirmed UniProt:Q9UAX9_CAEEL protein_id:AAK95885.1| [wormORF-contam.fasta]
  • Y38A10A.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein Y38A10A.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE28975 WBGene00021391 status:Confirmed UniProt:Q9UAX9 protein_id:AAK95885.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE28975 WBGene00021391 status:Confirmed UniProt:Q9UAX9 protein_id:CCD69630.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE28975 WBGene00021391 locus:smut-1 status:Confirmed UniProt:Q9UAX9 protein_id:CCD69630.1 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 520 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: RNA interference [IMP]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    ATP binding [IEALink to PubMed article]
    DNA binding [IEALink to PubMed article]
    ATP-dependent helicase activity [IEALink to PubMed article]
    helicase activity [IEALink to PubMed article]
    hydrolase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPHPWNTADA LDDSRVQVEH IDLVPPKYAN VLNFRSIKTR DYYFAMRDRH QQLGAVTSSK  60
   61 AETDKLNKHC EENTIMVDQD GVETPADYGT ERMVAHAIED HRLAANLQRI KVHILNAVQQ 120
  121 KSIQAIRDRR GLLVDAPTGI GKTYAFLIPA IEIALRERPL LTNISTTPSP TILILANTNS 180
  181 LVEQLFNRCE VLLGLIDMED IIPIRDIKIE KLVASYQFTK DQCDIAFCTM GKLKASIEDK 240
  241 TILLDNLKMM ILDESDKMID IACFGNDIDW VLDQLQEDVL RNLQSCFFSA SHNRNEDGSI 300
  301 ALTSRQSRML GENPWSLIHC PRLPGYITQR VIRIGGQRVN DIHSNPWIVK MNIICKLLDD 360
  361 DLKEMGSTKE GPWKHTIAIF CETVSRVIQV TMALRQMGYN FKPVCSSVLK QQQAITLNDL 420
  421 EFCNIHGVVC TNIMSRGIDV SSVKQTIIME MSTDFPSYMH RIGRVGRDGC GGRATVLIDE 480
  481 HHLFGGPMSN IIEQLCSFML ECEETLPNWL VEWLKLRQSL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..520] PSI-BLAST 86.30103 No description for 2db3A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle