YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: nhr-49

General Information:
Name(s) found: nhr-49 / CE28943 [WormBase]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • WBGene00003639 locus:nhr-49 Nuclear hormone receptor family member nhr-49 status:Confirmed UniProt:O45666 protein_id:CAD21653.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 476 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article]
    positive regulation of locomotion [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]
    transcription factor activity [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    steroid hormone receptor activity [IEALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]
    steroid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLVDPLAEP CAVCGDKSTG THYGVISCNG CKGFFRRTVL RDQKFTCRFN KRCVIDKNFR  60
   61 CACRYCRFQK CVQVGMKREA IQFERDPVGS PTSGASLNGT PFKKDRSPGY ENGNSNGVGS 120
  121 NGMGQENMRT VPQSSSVIDA LMEMEARVNQ EMCNRYRRSQ IFANGSGGSN GNDTDIQQGS 180
  181 DSGASAFAPP NRPCTTEDLN EISRTTLLLM VEWAKTINPF MDLSMEDKII LLKNYAPQHL 240
  241 ILMPAFRSPD TTRVCLFNNT YMTRDNNTDL NGFAAFKTSN ITPRVLDEIV WPMRQLQMRE 300
  301 QEFVCLKALA FLHPEAKGLS NSSQIMIRDA RNRVLKALYA FILDQMPDDA PTRYGNILLL 360
  361 APALKALTQL LIENMTLTKF FGLAEVDSLL SEFILDDIND HSTAPVSLQQ HLSSPTTLPT 420
  421 NGVSPLNPAG SVGSVSSVSG ITPTGMLSAT LAAPLAIHPL QSQDSILNSE QNNHML

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..120] PSI-BLAST 27.39794 Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter
    2 View Details [121..398] PSI-BLAST 48.154902 No description for 2gl8A was found.
    3 View Details [399..476] MSA 1.190997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle