| Protein: | nhr-49 |
| Organism: | Caenorhabditis elegans |
| Length: | 476 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-49.
| Description | E-value | Query Range |
Subject Range |
|
|
319.0 | [0..4] | [445..449] |
|
Region A: Residues: [1-120] |
1 11 21 31 41 51
| | | | | |
1 MDLVDPLAEP CAVCGDKSTG THYGVISCNG CKGFFRRTVL RDQKFTCRFN KRCVIDKNFR 60
61 CACRYCRFQK CVQVGMKREA IQFERDPVGS PTSGASLNGT PFKKDRSPGY ENGNSNGVGS 120
121
|
| Detection Method: |  |
| Confidence: | 27.39794 |
| Match: | 2a66A |
| Description: | Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [121-398] |
1 11 21 31 41 51
| | | | | |
1 NGMGQENMRT VPQSSSVIDA LMEMEARVNQ EMCNRYRRSQ IFANGSGGSN GNDTDIQQGS 60
61 DSGASAFAPP NRPCTTEDLN EISRTTLLLM VEWAKTINPF MDLSMEDKII LLKNYAPQHL 120
121 ILMPAFRSPD TTRVCLFNNT YMTRDNNTDL NGFAAFKTSN ITPRVLDEIV WPMRQLQMRE 180
181 QEFVCLKALA FLHPEAKGLS NSSQIMIRDA RNRVLKALYA FILDQMPDDA PTRYGNILLL 240
241 APALKALTQL LIENMTLTKF FGLAEVDSLL SEFILDDI
|
| Detection Method: | |
| Confidence: | 48.154902 |
| Match: | 2gl8A |
| Description: | No description for 2gl8A was found. |
|
Region A: Residues: [399-476] |
1 11 21 31 41 51
| | | | | |
1 NDHSTAPVSL QQHLSSPTTL PTNGVSPLNP AGSVGSVSSV SGITPTGMLS ATLAAPLAIH 60
61 PLQSQDSILN SEQNNHML
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
