Protein Overview: nhr-100

General Information:
Name(s) found:	nhr-100 / CE28893 [WormBase]
Description(s) found: SHOW ONLY BEST	WBGene00003690 locus:nhr-100 Nuclear hormone receptor family member nhr-100 status:Confirmed UniProt:O17611 protein_id:CAB05126.3 [WormBase] gi\|74957644\|sp\|O17611.3\|NH100_CAEEL RecName: Full=Nuclear hormone receptor family member nhr-100 [NCBI NR] gi\|38147361\|gb\|AAR11993.1\| nuclear receptor NHR-100 [Caenorhabditis elegans] [NCBI NR] gi\|17538852\|ref\|NP_501731.1\| Nuclear Hormone Receptor family member (nhr-100) [Caenorhabditis elegans] [NCBI NR] gi\|15718177\|emb\|CAB05126.3\| C. elegans protein C28D4.1, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR] Nuclear hormone receptor family member nhr-100 OS=Caenorhabditis elegans GN=nhr-100 PE=2 SV=3 [Swiss-Prot] [wormpep67.fasta] CE28893 WBGene00003690 locus:nhr-100 Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type status:Confirmed TR:O17611 protein_id:CAB05126.3 [wormpep150.fasta] 28893 WBGene00003690 locus:nhr-100 Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type status:Partially_confirmed TR:O17611 protein_id:CAB05126.3 [wormpep130-phg-ecoli-orf-rand.fasta] nuclear Hormone Receptor (51.1 kD) (nhr-138ANDnhr-100) [Caenorhabditis elegans]gi\|38147361\|gb\|AAR11993.1\| nuclear receptor NHR-100 [Caenorhabditis elegans]gi\|15718177\|emb\|CAB05126.3\| Hypothetical protein C28D4.1 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas] CE28893 WBGene00003690 locus:nhr-100 Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type status:Partially_confirmed TR:O17611 protein_id:CAB05126.3 [wormpep132.fasta] 28893 WBGene00003690 locus:nhr-100 Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type status:Confirmed TR:O17611 protein_id:CAB05126.3 [wormpep150-phg-orf-ecoli-rand.fasta] locus:nhr-100 Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type status:Partially_confirmed TR:O17611 protein_id:CAB05126.3 [wormpep115.fasta.reversed] CE28893 Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type status:Partially_confirmed TR:O17611 protein_id:CAB05126.3 [wormpep80.hongbin] CE28893 WBGene00003690 locus:nhr-100 Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type status:Confirmed UniProt:O17611 protein_id:CAB05126.3 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta] CE28893 WBGene00003690 locus:nhr-100 Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type status:Confirmed UniProt:O17611 protein_id:CAB05126.3\| [wormORF-contam.fasta] CE28893 WBGene00003690 locus:nhr-100 Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type status:Confirmed SW:O17611 protein_id:CAB05126.3 [wormpep160-contam.fasta] nuclear receptor NHR-100 [Caenorhabditis elegans] [nr-271106-contam.fasta] Nuclear Hormone Receptor family member (nhr-100) [Caenorhabditis elegans] [nr-271106-contam.fasta] Nuclear hormone receptor family member nhr-100 [nr-271106-contam.fasta] Hypothetical protein C28D4.1 [Caenorhabditis elegans] [nr-271106-contam.fasta] [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr] CE28893 WBGene00003690 locus:nhr-100 status:Confirmed UniProt:O17611 protein_id:CAB05126.3 Nuclear hormone receptor family member nhr-100 [wormpep246-ecoli-contam.fasta]
Organism:	Caenorhabditis elegans
Length:	437 amino acids
Gene Ontology:
Cellular Component:	nucleus [IEA]
Biological Process:	regulation of transcription, DNA-dependent [IEA]
Molecular Function:	transcription factor activity [IEA] zinc ion binding [IEA] steroid hormone receptor activity [IEA] sequence-specific DNA binding [IEA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIPFNSVSK IQWRNPSPVS DTSCLVCGDP HGKRHYGAMS CNGCKGFFRR SIWEKRTYKC  60
   61 SFNNECIIEF KYRNRCRACR LKRCLHVGMD ANAVRSERTR KIKTEIDGDV KLEIKEEPAD 120
  121 SEDADDECPL DIKPDIAMAW QTKEIIAHML YEEDRVLNWE EPYNKLRYYT MDSEVLQAIK 180
  181 DPSQVCARTK INWNSHSRPL ITIEALRFNW CRTFTLTIDW FETLPEYRAL IDDDKELLVK 240
  241 FSLMPVGWLW YAYKSYEYRC DGIVFVDGSW FPRDKTIQQQ VCPTCVLYYG RITESFMADV 300
  301 VNSMKELEMD ETEMVLLKAI CHLQPDYRLT RRGNDVISTG REKYKRALCE YIRMKSNGFM 360
  361 DASFRLCKLM QILPVVDILG KYEDESALLV SLGETEFNGS GGGLPYDIHA SDSHFARKNR 420
  421 RKSDNQYHQQ HVPLHIQ

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..95]	PSI-BLAST	24.69897	Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter
2	View Details	[96..437]	PSI-BLAST	33.0	hemipteran ecdysone receptor ligand-binding domain complexed with ponasterone A

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: nhr-100

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: