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Protein Overview: tra-4

General Information:
Name(s) found: tra-4 / CE28444 [WormBase]
Description(s) found:
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  • WBGene00018740 locus:tra-4 status:Confirmed UniProt:Q20709 protein_id:CCD61859.1 [WormBase]
  • gi|17568077|ref|NP_508494.1| TRAnsformer : XX animals transformed into males family member (tra-4) [Caenorhabditis elegans] [NCBI NR]
  • gi|14916300|gb|AAA81404.2| Hypothetical protein F53B3.1 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE28444 WBGene00018740 status:Partially_confirmed TR:Q20709 protein_id:AAA81404.2 [wormpep150.fasta]
  • 28444 WBGene00018740 status:Partially_confirmed TR:Q20709 protein_id:AAA81404.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • C2H2 type zinc finger containing protein (XD472) [Caenorhabditis elegans]gi|14916300|gb|AAA81404.2| Hypothetical protein F53B3.1 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q20709 protein_id:AAA81404.2 [wormpep115.fasta.reversed]
  • CE28444 status:Partially_confirmed TR:Q20709 protein_id:AAA81404.2 [wormpep80.hongbin]
  • CE28444 WBGene00018740 locus:tra-4 status:Partially_confirmed UniProt:Q20709_CAEEL protein_id:AAA81404.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE28444 WBGene00018740 locus:tra-4 status:Partially_confirmed UniProt:Q20709_CAEEL protein_id:AAA81404.2| [wormORF-contam.fasta]
  • Hypothetical protein F53B3.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F53B3.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE28444 WBGene00018740 locus:tra-4 status:Partially_confirmed TR:Q20709 protein_id:AAA81404.2 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE28444 WBGene00018740 locus:tra-4 status:Partially_confirmed UniProt:Q20709 protein_id:AAA81404.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE28444 WBGene00018740 locus:tra-4 status:Confirmed UniProt:Q20709 protein_id:CCD61859.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • TRAnsformer: XX animals transformed into males OS=Caenorhabditis elegans GN=tra-4 PE=1 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 543 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: oviposition [IMPLink to PubMed article]
    phosphate metabolic process [IEALink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    magnesium ion binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    inorganic diphosphatase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDPNQCTIK QEDSITRPRP TEAPTIQNLK QEPAIEEGSS STMDNMLMLT IDTNQANWQG  60
   61 TYDDDEMDLN NKTDLIPLLE TEKTTINEDE LYDDEEDDDD DEEIKKGIGF ELLAQALGMS 120
  121 AKVPVEKEEP EKERAKLSGV GEFMKQIRGE IKPIQKERIV LDELGFRVRD PSKFPPCRIA 180
  181 EVQQTLTLAD HQDGIDLPPP NAPTDVRIVR KLIRQKMVRC KKCKNRFIEK NIYERHLRDK 240
  241 HPDLYEEYIR EQEEEVELQR LEEIEANRIE ELQTGGFIPP ENEISQPSED PNYIPLPGEN 300
  301 NGGLVPRFDY YGRIKQLKRP YKKKVSPQCP FCDKRFRNEF SLKKHFAKKH EEMVEFQQCL 360
  361 KCFKCVENDA EMANHDCELT YVCFECTPIR NLCTDNRLLN HRKKFHRGAN SGFRCSFCNM 420
  421 KFLTPRKLRK HKKMSHVFTK TFQCHFCEEI FISEVAVMTH ERMHTGIIKF ECKVCDFRAN 480
  481 RYTAMEEHKR DEHGYVCAIC HERHAEYPEM KHHVYEEHGG YLAADEPTAY VETPRMWILY 540
  541 KGE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..81] deduced N/A No confident structure predictions are available.
    2 View Details [82..193] MSA 1.424995 View MSA. No confident structure predictions are available.
    3 View Details [194..304] deduced N/A No confident structure predictions are available.
    4 View Details [305..543] PSI-BLAST 53.09691 No description for 2i13A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle