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Protein Overview: pal-1

General Information:
Name(s) found: pal-1 / CE27837 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00003912 locus:pal-1 Homeobox protein pal-1 status:Confirmed UniProt:P34766 protein_id:CAA86322.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 270 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][IEALink to PubMed article]
    condensed nuclear chromosome [IDALink to PubMed article]
    Biological Process: embryonic development [IMPLink to PubMed article]
    ectodermal cell fate commitment [IMPLink to PubMed article]
    embryonic pattern specification [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    muscle cell fate commitment [IMPLink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article]
    positive regulation of transcription from RNA polymerase II promoter [IMPLink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    RNA polymerase II transcription factor activity [IMPLink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVDVKSDFS ENESSSTPSP TTVPADVTWP HYPMMPFMQP HPLREKMLQP TFDPQIYGRW  60
   61 SQMGDTGFYG HPDLYPFGLP QLAANGQIPA VEAVDVKPPL SNGSSSSDSG MYPSPSDMMT 120
  121 PFPSTSSGAA SSSELSAAAA AAANYQMRAA TCYQQSVWPF MDYQQFQGFS WKMPLGNNHG 180
  181 KDRRSSSDGK TLPTGPGTNN VRVRTADKYR MVYSDYQRLE LEKEFHTSPF ITSDRKSQLS 240
  241 TMLSLTERQI KIWFQNRRAK DRRDKQKIRL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..193] MSA 4.746997 View MSA. No confident structure predictions are available.
    2 View Details [194..270] PSI-BLAST 22.69897 Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle