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Protein Overview: pgl-3

General Information:
Name(s) found: pgl-3 / CE27717 [WormBase]
Description(s) found:
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  • WBGene00003994 locus:pgl-3 status:Confirmed UniProt:Q965J2 protein_id:CCD65227.1 [WormBase]
  • gi|17558134|ref|NP_504279.1| P GranuLe abnormality family member (pgl-3) [Caenorhabditis elegans] [NCBI NR]
  • gi|14573845|gb|AAK68200.1|AF068708_5 P granule abnormality protein 3, isoform b [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE27717 WBGene00003994 locus:pgl-3 status:Confirmed TR:Q965J2 protein_id:AAK68200.1 [wormpep150.fasta]
  • 27717 WBGene00015983 status:Partially_confirmed TR:Q965J2 protein_id:AAK68200.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative secreted or extracellular protein precursor (67.7 kD) (5F235) [Caenorhabditis elegans]gi|14573845|gb|AAK68200.1| Hypothetical protein C18G1.4b [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE27717 WBGene00015983 status:Partially_confirmed TR:Q965J2 protein_id:AAK68200.1 [wormpep132.fasta]
  • 27717 WBGene00003994 locus:pgl-3 status:Confirmed TR:Q965J2 protein_id:AAK68200.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • CE27717 WBGene00015983 status:Confirmed TR:Q965J2 protein_id:AAK68200.1 [WormBase_C-elegans_na_01-20-2005_combined_reversed.fasta]
  • status:Partially_confirmed TR:Q965J2 protein_id:AAK68200.1 [wormpep115.fasta.reversed]
  • CE27717 status:Predicted TR:Q965J2 protein_id:AAK68200.1 [wormpep80.hongbin]
  • CE27717 WBGene00003994 locus:pgl-3 status:Confirmed UniProt:Q965J2_CAEEL protein_id:AAK68200.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE27717 WBGene00003994 locus:pgl-3 status:Confirmed UniProt:Q965J2_CAEEL protein_id:AAK68200.1| [wormORF-contam.fasta]
  • P GranuLe abnormality family member (pgl-3) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein C18G1.4b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE27717 WBGene00003994 locus:pgl-3 status:Confirmed UniProt:Q965J2 protein_id:AAK68200.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE27717 WBGene00003994 locus:pgl-3 status:Confirmed UniProt:Q965J2 protein_id:CCD65227.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • Isoform of G5EBV6, Uncharacterized protein OS=Caenorhabditis elegans GN=pgl-3 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 628 amino acids

    Gene Ontology:
    Cellular Component: P granule [IDALink to PubMed article]
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPVPTCLLL AWTFALFSGM TSLRPKFDSG AEKLSQLGQA HDLAPIIDDE KKISMLARKT  60
   61 KLKKSNDAKI LQVLLKVLGA EEAEEKFVEL SELSSALDLD FDVYVLAKLL GFASEELQEE 120
  121 IEIIRDNVTD AFEACKPLLK KLMIEGPKID SVDPFTQLLL TPQEESIEKA VSHIVARFEE 180
  181 ASAVEDDESL VLKSQLGYQL IFLVVRSLAD GKRDASRTIQ SLMPSSVRAE VFPGLQRSVF 240
  241 KSAVFLASHI IQVFLGSMKS FEDWAFVGLA EDLESTWRRR AIAELLKKFR ISVLEQCFSQ 300
  301 PIPLLPQSEL NNETVIENVN NALQFALWIT EFYGSESEKK SLNQLQFLSP KSKNLLVDSF 360
  361 KKFAQGLDSK DHVNRIIESL EKSSSSEPSA TAKQTTTSNG PTTVSTAAQV VTVEKMPFSR 420
  421 QTIPCEGTDL ANVLNSAKII GESVTVAAHD VIPEKLNAEK NDNTPSTASP VQFSSDGWDS 480
  481 PTKSVALPPK ISTLEEEQEE DTTITKVSPQ PQERTGTAWG SGDATPVPLA TPVNEYKVSG 540
  541 FGAAPVASGF GQFASSNGTS GRGSYGGGRG GDRGGRGAYG GDRGRGGSGD GSRGYRGGDR 600
  601 GGRGSYGEGS RGYQGGRAGF FGGSRGGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..148] deduced N/A No confident structure predictions are available.
    2 View Details [149..305] deduced N/A No confident structure predictions are available.
    3 View Details [306..418] MSA 1.006975 View MSA. No confident structure predictions are available.
    4 View Details [419..532] MSA 1.038992 View MSA. No confident structure predictions are available.
    5 View Details [533..628] PSI-BLAST 5.221849 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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