YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: pgl-3
Organism: Caenorhabditis elegans
Length: 628 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pgl-3.

Description E-value Query
Range
Subject
Range
pgl-3 - status:Confirmed UniProt:O61920 protein_id:AAC17755.1
802.0 [0..3] [560..77]

Back

Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPVPTCLLL AWTFALFSGM TSLRPKFDSG AEKLSQLGQA HDLAPIIDDE KKISMLARKT  60
   61 KLKKSNDAKI LQVLLKVLGA EEAEEKFVEL SELSSALDLD FDVYVLAKLL GFASEELQEE 120
  121 IEIIRDNVTD AFEACKPLLK KLMIEGPK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [149-305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDSVDPFTQL LLTPQEESIE KAVSHIVARF EEASAVEDDE SLVLKSQLGY QLIFLVVRSL  60
   61 ADGKRDASRT IQSLMPSSVR AEVFPGLQRS VFKSAVFLAS HIIQVFLGSM KSFEDWAFVG 120
  121 LAEDLESTWR RRAIAELLKK FRISVLEQCF SQPIPLL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [306-418]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQSELNNETV IENVNNALQF ALWITEFYGS ESEKKSLNQL QFLSPKSKNL LVDSFKKFAQ  60
   61 GLDSKDHVNR IIESLEKSSS SEPSATAKQT TTSNGPTTVS TAAQVVTVEK MPF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [419-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRQTIPCEGT DLANVLNSAK IIGESVTVAA HDVIPEKLNA EKNDNTPSTA SPVQFSSDGW  60
   61 DSPTKSVALP PKISTLEEEQ EEDTTITKVS PQPQERTGTA WGSGDATPVP LATP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [533-628]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNEYKVSGFG AAPVASGFGQ FASSNGTSGR GSYGGGRGGD RGGRGAYGGD RGRGGSGDGS  60
   61 RGYRGGDRGG RGSYGEGSRG YQGGRAGFFG GSRGGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.221849
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle