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View Structure Prediction Details

Protein: pgl-3
Organism: Caenorhabditis elegans
Length: 628 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pgl-3.

Description E-value Query
Range
Subject
Range
pgl-3 - status:Confirmed UniProt:O61920 protein_id:AAC17755.1
802.0 [0..3] [560..77]

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Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPVPTCLLL AWTFALFSGM TSLRPKFDSG AEKLSQLGQA HDLAPIIDDE KKISMLARKT  60
   61 KLKKSNDAKI LQVLLKVLGA EEAEEKFVEL SELSSALDLD FDVYVLAKLL GFASEELQEE 120
  121 IEIIRDNVTD AFEACKPLLK KLMIEGPK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [149-305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDSVDPFTQL LLTPQEESIE KAVSHIVARF EEASAVEDDE SLVLKSQLGY QLIFLVVRSL  60
   61 ADGKRDASRT IQSLMPSSVR AEVFPGLQRS VFKSAVFLAS HIIQVFLGSM KSFEDWAFVG 120
  121 LAEDLESTWR RRAIAELLKK FRISVLEQCF SQPIPLL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [306-418]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQSELNNETV IENVNNALQF ALWITEFYGS ESEKKSLNQL QFLSPKSKNL LVDSFKKFAQ  60
   61 GLDSKDHVNR IIESLEKSSS SEPSATAKQT TTSNGPTTVS TAAQVVTVEK MPF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [419-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRQTIPCEGT DLANVLNSAK IIGESVTVAA HDVIPEKLNA EKNDNTPSTA SPVQFSSDGW  60
   61 DSPTKSVALP PKISTLEEEQ EEDTTITKVS PQPQERTGTA WGSGDATPVP LATP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [533-628]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNEYKVSGFG AAPVASGFGQ FASSNGTSGR GSYGGGRGGD RGGRGAYGGD RGRGGSGDGS  60
   61 RGYRGGDRGG RGSYGEGSRG YQGGRAGFFG GSRGGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.221849
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle