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Protein Overview: amt-4

General Information:
Name(s) found: amt-4 / CE27655 [WormBase]
Description(s) found:
Found 15 descriptions.
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  • WBGene00000136 locus:amt-4 ammonium transporter status:Partially_confirmed UniProt:Q17663 protein_id:AAA96190.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 558 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: transport [IEALink to PubMed article]
    Molecular Function: ammonium transmembrane transporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEDFSENDN AFFLCSMSLI IFLMQCGFAF LEAGAVRSKN TTNILIKNLL DSCIAIVGYW  60
   61 ALGWALAFGD CPNNTIGLFV GYSEFFLANF SNYPKFFFQY VFAATSATIV SGAVAERCEF 120
  121 ANYITYCSVI STLVYPILTH WGWHPKGWMA LGITSGVINT HYDDFAGSGV VHLCGGSISF 180
  181 LAAYMIGPRI GRFPEDDDDE CDEILGHSVP FAALGGFILM FGFLAFNGGS MADIVKPGEG 240
  241 HIVALAMVNT ILSGAFAALT YLIAHYLYHG KWTLLLTINA CLAGMVASCA GCNKMEPWAC 300
  301 IWVGVGAGLI YLGLSKLMVR LKIDDPLDAF AVHAGGGFWG LTSVAFIGHD GVVYSIGNTI 360
  361 GGATNGGDQI AQAFAQLGWQ WVCALAIVTW SILWMWPIFA LLRKIGKLRV SAEVEINGLD 420
  421 IYKHGESAYP LHAYGHGWHD FEAAPDSKIN HSKHLPVGRK NRIMSVHPEM SLEQLASVYD 480
  481 RTGSVGESDQ PKRLFMNQTE RRKSRMIEAN ALHALYLDDN EVPERKNTNP KTVSLQVPTT 540
  541 IIEAAEDEAD KMTENDRM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..433] PSI-BLAST 97.30103 No description for 2ns1A was found.
    2 View Details [434..558] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ammonium transmembrane transporter activity
    		•  10.0624820335928 bayes_pls_golite062009
  • organic cation transmembrane transporter activity
    		•  9.07420898067257 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  7.57181833547312 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  7.46308808953548 bayes_pls_golite062009
  • methylammonium transmembrane transporter activity
    		•  7.38326654060024 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  7.08971867997216 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  7.03159982829686 bayes_pls_golite062009
  • transporter activity
    		•  5.3870893301235 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  5.3046132351753 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  5.16067985999244 bayes_pls_golite062009
  • high affinity secondary active ammonium transmembrane transporter activity
    		•  3.56825523857899 bayes_pls_golite062009
  • amine transmembrane transporter activity
    		•  2.81164277777293 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.08017669832334 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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