YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	amt-4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.87
Transmembrane Helix	12	34	0.87
Cytoplasmic	35	47	0.77
Transmembrane Helix	48	68	0.86
Non-Cytoplasmic	69	95	0.91
Transmembrane Helix	96	115	0.94
Cytoplasmic	116	122	0.86
Transmembrane Helix	123	144	0.92
Non-Cytoplasmic	145	164	0.98
Transmembrane Helix	165	187	0.90
Cytoplasmic	188	203	0.95
Transmembrane Helix	204	226	0.87
Non-Cytoplasmic	227	241	0.83
Transmembrane Helix	242	263	0.95
Cytoplasmic	264	271	0.82
Transmembrane Helix	272	291	0.95
Non-Cytoplasmic	292	297	0.84
Transmembrane Helix	298	319	0.91
Cytoplasmic	320	328	0.92
Transmembrane Helix	329	349	0.91
Non-Cytoplasmic	350	376	0.90
Transmembrane Helix	377	399	0.90
Cytoplasmic	400	558	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEDFSENDN AFFLCSMSLI IFLMQCGFAF LEAGAVRSKN TTNILIKNLL DSCIAIVGYW  60
   61 ALGWALAFGD CPNNTIGLFV GYSEFFLANF SNYPKFFFQY VFAATSATIV SGAVAERCEF 120
  121 ANYITYCSVI STLVYPILTH WGWHPKGWMA LGITSGVINT HYDDFAGSGV VHLCGGSISF 180
  181 LAAYMIGPRI GRFPEDDDDE CDEILGHSVP FAALGGFILM FGFLAFNGGS MADIVKPGEG 240
  241 HIVALAMVNT ILSGAFAALT YLIAHYLYHG KWTLLLTINA CLAGMVASCA GCNKMEPWAC 300
  301 IWVGVGAGLI YLGLSKLMVR LKIDDPLDAF AVHAGGGFWG LTSVAFIGHD GVVYSIGNTI 360
  361 GGATNGGDQI AQAFAQLGWQ WVCALAIVTW SILWMWPIFA LLRKIGKLRV SAEVEINGLD 420
  421 IYKHGESAYP LHAYGHGWHD FEAAPDSKIN HSKHLPVGRK NRIMSVHPEM SLEQLASVYD 480
  481 RTGSVGESDQ PKRLFMNQTE RRKSRMIEAN ALHALYLDDN EVPERKNTNP KTVSLQVPTT 540
  541 IIEAAEDEAD KMTENDRM