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Protein Overview: CE27481

General Information:
Name(s) found: CE27481 [WormBase]
Description(s) found:
Found 17 descriptions.
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  • WBGene00021843 status:Confirmed UniProt:Q9N3D3 protein_id:CCD72990.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 364 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    gamete generation [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNKEKPIKH LVIDTCAIIA NRNLHALADH YYAPPQILDE LRSSAARKLW NTLPFEVTLR  60
   61 EPTQTALRAV IDASKTTGDF QSLSMVDIKM IALTYDLHRQ YVAENDVAET TEDDEKKNIE 120
  121 DLSAKVEQVT VGENTEDTKE EEIEENEESE DSAVSEGSES SESSESFDED GWITQDNIEE 180
  181 TLKKLGAFEI EENMLVGCLT TDFALQNVLL AMNLSLVSLS GYRIRKLKSF VLRCRTCFST 240
  241 TSVMTKEFCP ACGHKTLHKC AVSVDEDGNQ QLHINWNRMA NRRGLVYTLA NPKGGKHATN 300
  301 ERLFEDQPMP HMRMAKIHMD PLADGPFSVH DVTSRSAMLG VRTINNRAKQ NRNPNESKRG 360
  361 GRRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..127] FFAS03 1.89 Hypothetical protein AF0591
    2 View Details [128..224] deduced N/A No confident structure predictions are available.
    3 View Details [225..364] PSI-BLAST 25.0 Solution Structure of RSGI RUH-035, a Zn-ribbon module in Mouse cDNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • exonuclease activity
    		•  2.20884893250825 bayes_pls_golite062009
  • binding
    		•  1.86375021779651 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.2490597933903 bayes_pls_golite062009
  • DNA binding
    		•  1.20124609530471 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.09430328971825 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  0.948612547993755 bayes_pls_golite062009
  • nuclease activity
    		•  0.932217848952722 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  0.620146212680627 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.536819960055588 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.457405908807867 bayes_pls_golite062009
  • protein binding
    		•  0.388252010955945 bayes_pls_golite062009
  • flap endonuclease activity
    		•  0.28412745918891 bayes_pls_golite062009
  • endonuclease activity
    		•  0.148170166509108 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  2.07200237133183 bayes_pls_golite062009
  • RNA binding
    		•  1.94349729191855 bayes_pls_golite062009
  • protein binding
    		•  0.567759936480502 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.493571954231014 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle