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Protein Overview: dnj-25

General Information:
Name(s) found: dnj-25 / CE27221 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00001043 locus:dnj-25 status:Confirmed UniProt:G5EDJ6 protein_id:CAB04929.2 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 784 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: molting cycle, protein-based cuticle [IMPLink to PubMed article]
    DNA repair [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    receptor-mediated endocytosis [IMPLink to PubMed article]
    growth [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: heat shock protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFDEEPPAQ KKWTQQATTS AFGLMESLKG QGSSLAKNLK NFGKSLVKEH KSQGATTPPE  60
   61 HRDDDIRLTW LTNRIVLADT LHKSKEGLLK AETAVVREMI DCQPYVVVNV HAEPLKLDGY 120
  121 AKSVHVPLGS AAKGGLPKYP TIQALVPILN EYCLLTNDAA IVIFGNDENV QITAAFCLIA 180
  181 SRTISRVSEF MSDSLPNRFD RLPVTYHLFL EQTKHVCKYH ARRQQLQSGA ILNQIILEPG 240
  241 TLLIDGDLYV AIQQGINQLK VVEFSANSCR NRQGQLVFNM ESTETVDDVV IFLGKKSDVK 300
  301 HPILASKFNT QLLHSEDSSI IFTSSEMDVS KMIASAMPVQ DLRMIVNFAT RRMPTLNTFQ 360
  361 FDRYKLLCVR NDRELDGYQR SYGDVDSEDE SPILRSARSK SGTKAAETSS SQGNFFDSLQ 420
  421 FEDRQEPHHF REQRDSTLLD HHDDVTHHTA DLLDGFTIGG TEKLSPANET PILSAPTPAS 480
  481 SDYDSMTSSQ NRRNPSPATA IDDLLGLGTE TSAPAPAPST HFNNSSSGAN LVDFDLGAPI 540
  541 KPTSSASNLS TASPATSSWS NTDLLGGFSP MKPQTTSTPP NTRNPSASNS KPVSQVNSQA 600
  601 DFEAFLSNYP EQRQAAPQNT QNVSQKTQQT RPQNTYKPAF GDAATGSAKV SMDAFSDLLN 660
  661 QGGFKPTQRE NQKQSIGNML KVEQSKNLTP EEIQIRDWTQ GKERNIRALL GSLHNVLWEG 720
  721 ADRWNQPSMG DLLTPDQIKK HYRKACLVVH PDKLTGSPHL SLAKMAFTEL NDAYSKYQND 780
  781 PAAM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..238] deduced N/A No confident structure predictions are available.
    2 View Details [239..353] deduced N/A No confident structure predictions are available.
    3 View Details [354..605] MSA 4.270996 View MSA. No confident structure predictions are available.
    4 View Details [606..784] PSI-BLAST 57.09691 NMR Structure of the J-Domain and Clathrin Substrate Binding Domain of Bovine Auxilin

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  1.09328326353746 bayes_pls_golite062009
  • protein binding
    		•  0.79106795097001 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle