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Protein Overview: CE27100

General Information:
Name(s) found: CE27100 [WormBase]
Description(s) found:
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  • WBGene00016174 status:Partially_confirmed UniProt:H2KZ27 protein_id:CCD65890.1 [WormBase]
  • gi|71983060|ref|NP_001021997.1| hypothetical protein C27H5.4 [Caenorhabditis elegans] [NCBI NR]
  • ref|NP_495486.1| putative protein, with at least 7 transmembrane domains, of ancient origin (2H454) [Caenorhabditis elegans] [NCBI NR]
  • gi|15145287|gb|AAC46658.2| Hypothetical protein C27H5.4a [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE27100 WBGene00016174 status:Partially_confirmed TR:Q18267 protein_id:AAC46658.2 [wormpep150.fasta]
  • 27100 WBGene00016174 status:Partially_confirmed TR:Q18267 protein_id:AAC46658.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative protein, with at least 7 transmembrane domains, of ancient origin (2H454) [Caenorhabditis elegans]gi|15145287|gb|AAC46658.2| Hypothetical protein C27H5.4a [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • status:Partially_confirmed TR:Q18267 protein_id:AAC46658.2 [wormpep115.fasta.reversed]
  • CE27100 status:Partially_confirmed TR:Q18267 protein_id:AAC46658.2 [wormpep80.hongbin]
  • CE27100 WBGene00016174 status:Partially_confirmed UniProt:Q18267_CAEEL protein_id:AAC46658.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE27100 WBGene00016174 status:Partially_confirmed UniProt:Q18267_CAEEL protein_id:AAC46658.2| [wormORF-contam.fasta]
  • Hypothetical protein C27H5.4a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • C27H5.4a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE27100 WBGene00016174 status:Partially_confirmed UniProt:Q18267 protein_id:AAC46658.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE27100 WBGene00016174 status:Partially_confirmed UniProt:H2KZ27 protein_id:CCD65890.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
    • Organism: Caenorhabditis elegans
    Length: 521 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: sodium ion transport [IEALink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: transporter activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSFTFLLSY SALLIGLISF AADSINYVFT SKYIQVFFDE FHLPPSYLKV VQILFLVWNA  60
   61 VNDPMMGYMQ DLGFCGMKWI MDRRKVVLYA GPVFAASFLL FWFPWSTSIG WVTALHLLVS 120
  121 LFIYDTLLTL VLSAYCGLCV ENSRSHEDRV RVIVYGEIFT IVAGLLIYPL ETMPHTNEHY 180
  181 WLFQLCCVVI ACISAALMAF SGYHLKVERP INEDHQLEKF QEGEVVKETK QDGWKNALTV 240
  241 SLQIAKEPRF ICLVGAQFFR ILRFIANENF LIVFTEGLLV NNGFFEKNSG SLGLFYVLAR 300
  301 SSGSVSRFFL ICEHDQFQIL FLLLWVPTNR FGTQAVIQSL NILSIFNVIF ILYAGVNNIT 360
  361 AIAIFIILEN AISRCGWQGF YIVVAGEVVD TDMKTNNRKT PFSTIIFTLK ALFNKPADQL 420
  421 APVFVLSLFL ERGGYPQLTV PCQQFYEDNY SNSTMFNSTS MESTTLSGYP TVAECTNYSQ 480
  481 WMFLALAIFP AICAIGESMF VAFDQYWRRH IKGKTGHLGD D

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..521] PSI-BLAST 24.221849 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.795545041075205 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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