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View Structure Prediction Details

Protein: CE27100
Organism: Caenorhabditis elegans
Length: 521 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27100.

Description E-value Query
Range
Subject
Range
gi|39582303, gi|... - gi|39582303|emb|CAE67552.1| Hypothetical protein CBG13077 [Caenorhabditis briggsae], gi|187028909|em...
212.0 [0..1] [521..1]

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Predicted Domain #1
Region A:
Residues: [1-521]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSFTFLLSY SALLIGLISF AADSINYVFT SKYIQVFFDE FHLPPSYLKV VQILFLVWNA  60
   61 VNDPMMGYMQ DLGFCGMKWI MDRRKVVLYA GPVFAASFLL FWFPWSTSIG WVTALHLLVS 120
  121 LFIYDTLLTL VLSAYCGLCV ENSRSHEDRV RVIVYGEIFT IVAGLLIYPL ETMPHTNEHY 180
  181 WLFQLCCVVI ACISAALMAF SGYHLKVERP INEDHQLEKF QEGEVVKETK QDGWKNALTV 240
  241 SLQIAKEPRF ICLVGAQFFR ILRFIANENF LIVFTEGLLV NNGFFEKNSG SLGLFYVLAR 300
  301 SSGSVSRFFL ICEHDQFQIL FLLLWVPTNR FGTQAVIQSL NILSIFNVIF ILYAGVNNIT 360
  361 AIAIFIILEN AISRCGWQGF YIVVAGEVVD TDMKTNNRKT PFSTIIFTLK ALFNKPADQL 420
  421 APVFVLSLFL ERGGYPQLTV PCQQFYEDNY SNSTMFNSTS MESTTLSGYP TVAECTNYSQ 480
  481 WMFLALAIFP AICAIGESMF VAFDQYWRRH IKGKTGHLGD D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.221849
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.795545041075205 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle