YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE27100
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSFTFLLSY SALLIGLISF AADSINYVFT SKYIQVFFDE FHLPPSYLKV VQILFLVWNA  60
   61 VNDPMMGYMQ DLGFCGMKWI MDRRKVVLYA GPVFAASFLL FWFPWSTSIG WVTALHLLVS 120
  121 LFIYDTLLTL VLSAYCGLCV ENSRSHEDRV RVIVYGEIFT IVAGLLIYPL ETMPHTNEHY 180
  181 WLFQLCCVVI ACISAALMAF SGYHLKVERP INEDHQLEKF QEGEVVKETK QDGWKNALTV 240
  241 SLQIAKEPRF ICLVGAQFFR ILRFIANENF LIVFTEGLLV NNGFFEKNSG SLGLFYVLAR 300
  301 SSGSVSRFFL ICEHDQFQIL FLLLWVPTNR FGTQAVIQSL NILSIFNVIF ILYAGVNNIT 360
  361 AIAIFIILEN AISRCGWQGF YIVVAGEVVD TDMKTNNRKT PFSTIIFTLK ALFNKPADQL 420
  421 APVFVLSLFL ERGGYPQLTV PCQQFYEDNY SNSTMFNSTS MESTTLSGYP TVAECTNYSQ 480
  481 WMFLALAIFP AICAIGESMF VAFDQYWRRH IKGKTGHLGD D

Type	Start	End	Confidence
Cytoplasmic	1	6	0.55
Transmembrane Helix	7	29	0.74
Non-Cytoplasmic	30	45	0.63
Transmembrane Helix	46	62	0.59
Cytoplasmic	63	85	0.83
Transmembrane Helix	86	105	0.96
Non-Cytoplasmic	106	113	0.80
Transmembrane Helix	114	139	0.84
Cytoplasmic	140	151	0.87
Transmembrane Helix	152	170	0.96
Non-Cytoplasmic	171	179	0.85
Transmembrane Helix	180	201	0.95
Cytoplasmic	202	342	0.74
Transmembrane Helix	343	368	0.79
Non-Cytoplasmic	369	480	0.64
Transmembrane Helix	481	503	0.85
Cytoplasmic	504	521	0.71